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Hsa_circ_0046264 up-regulated BRCA2 to suppress lung cancer through targeting hsa-miR-1245
Respiratory Research volume 19, Article number: 115 (2018)
Lung cancer had been leading mounts of deaths worldwide. Advances in genes microarray had helped human further understand genes and identify novel circular RNAs. This study aimed at investigating the biological functions and molecular mechanisms of hsa_circ_0046264 in lung cancer which may be helpful in lung cancer early diagnosis and clinical treatment.
Gene microarray data screened the differential gene of hsa_circ_0046264 and its downstream genes were found by bioinformatics analysis and verified by luciferase reporter assay. QRT-PCR and Western blot was used to detect the RNA and protein levels respectively. RNase R digestion confirmed the existences of circular RNA. Cell viability, invasion and apoptosis were determined by MTT assay, flow cytometry and DNA damage assay. Tumor formation in nude mice and immunohistochemistry proved the functions of hsa_circ_0046264 in vivo.
Hsa_circ_0046264 and BRCA2 were down-regulated in lung cancer tissues while miR-1245 was up-regulated. Hsa_circ_0046264 induced apoptosis but inhibited proliferation and invasion of lung cancer cells through targeting miR-1245 to up-regulate BRCA2. Hsa_circ_0046264 inhibited the tumor growth in vivo.
Hsa_circ_0046264 was a tumor suppressor in lung cancer. Overexpression of hsa_circ_0046264 could up-regulate BRCA2 expression through down-regulating of miR-1245.
Lung cancer mortality ranks the highest in cancer-related death, and the five-year survival rate is only about 20% . The development of target small molecule inhibitors provides an alternative treatment strategy to chemotherapy for lung cancer patients, with improved survival rate and life quality [2, 3]. The exploration of the molecular mechanisms in lung cancer is very important for developing new strategies of diagnosis and treatment to this disease . Novel therapeutic targets together with prognostic biomarkers for lung carcinogenesis have been discovered due to the development of molecular biology techniques . Therefore, detailed understanding of the molecular mechanisms and searching for innovative targets are essential for the improvement of lung cancer treatment.
Circular RNAs (circRNAs) are featured with enormous abundance, evolutional conservation and relative stablity in cytoplasm that confer numerous potential functions, such as acting as competing endogenous RNAs (ceRNAs) for encoding RNAs, sponging microRNAs (miRNAs) to regulate miRNAs’ downstream genes [6, 7]. Hansen et al. identified ciRS-7, a circular RNA, which acts as a designated miR-7 inhibitor/sponge, has conceptually changed the mechanistic understanding of miRNA networks in cancers . With binding capacities to miRNAs, some circRNAs were demonstrated to have great influence on lung cancer progression. For instance, significant down-regulation of circRNA ITCH was discovered in lung cancer and up-regulating its expression could markedly elevate its parental cancer-suppressive gene ITCH through sponging oncogenic miR-7 and miR-214 . In non-small cell lung cancer, hsa_circ_0043256 could be up-regulated by cinnamaldehyde and functioned as a miR-1252 sponge to positively affect ITCH expression . Hsa_circ_0013958 was up-regulated in lung adenocarcinoma and identified as a sponge of miR-134, thus up-regulating oncogenic cyclin D1 . Since studies on circRNAs are not sufficient, in-depth researches about their functions in lung cancer are still needed.
As small (up to 21 nucleotides) noncoding RNAs, miRNAs can regulate their downstream genes through binding to the 3’UTRs of the target genes . MiR-1245 was considered as an oncogene because it was demonstrated as a potent negative regulator of the tumor suppressor protein BRCA2 . MiR-1245 attenuated the expression of NKG2D, an activating receptor involved in tumor immunosurveillance, in natural killer cells . It directly targeted BRCA2 and suppressed its translation in breast cancer . As a tumor suppressor gene, BRCA2 mutation was reported to be associated with breast cancer and ovarian cancer development [16, 17]. Its expression was frequently down-regulated in lung adenocarcinomas . Therefore, miR-1245 and its target gene BRCA2 might affect the progression of lung cancers.
In the present study, we evaluated the expression profiles of circRNAs in lung cancer tissues and found the significant downregulation of hsa_circ_0046264. The biological functions of hsa_circ_0046264 and its regulatory relationships with miR-1245 and BRCA2 were investigated. The results indicated the suppressive effect of hsa_circ_0046264 in lung cancer and provided novel insights into the crucial role of circRNA.
Materials and methods
The expression profiles of circRNAs in 10 tissue samples (5 lung cancer tissues and 5 non-tumor adjacent tissues) were analyzed by microarray GSE101586 from GPL19978 platform. Five female lung patients with no smoking history were selected to profile circular RNA expression with microarrays. CircRNAs differentially expressed between tumor and normal tissues were identified via fold change filtering and P value. The screening condition was fold change > 2 and P < 0.05. Hierarchical clustering was performed to show the distinguishable circRNA expression pattern among samples.
Participants and tissue samples
In total, 99 lung cancer tissue specimens, containing 23-paired specimens, were obtained from Affiliated Calmette Hospital of Kunming Medical University (Yunnan, China). The pathological information refered in this paper was provided in Table 1. Among them, 23 pared specimens included 5 Stage I tissues without lymphatic metastasis, 4 Stage II tissues, 6 Stage III tissues and 8 Stage IV tissues. The corresponding adjacent nontumorous tissues were taken 5 cm from the edge of the cancer and contained no obvious tumor cells. All specimens were confirmed as lung cancer by 3 independent pathologists. No patient received chemotherapy or other treatments for lung cancer before surgery. Tissues were acquired and immediately frozen in liquid nitrogen and stored at − 80 °C until use. Follow-up information of all the patients was collected through office visits or telephone interviews either with the patients or with a relative. The time of follow-up was calculated until death or last contact in October 2017. This study was approved by the Ethical Review Board for Research in the Affiliated Calmette Hospital of Kunming Medical University.
Cell lines and cell culture
Cell lines included human highly metastasis lung cancer cell line 95-D, common lung cancer cell line A549, normal human lung cell line HLF-a and normal human embryonic lung fibroblast line MRC-5. 95-D and A549 were provided by the Cell Bank of Type Culture Collection of the Chinese Academy of Sciences (Shanghai, China). HLF-a and MRC-5 were purchased from BeNa Culture Collection (Beijing, China). 95-D cells were cultured in RPMI-1640 (GIBCO, Grand Island, NY, USA) and 10% FBS (GIBCO), while MRC-5, HLF-a and A549 cells were cultured in high-glucose DMEM (Thermo Fisher Scientific, Waltham, MA, USA) and 10% FBS. Cells were incubated at 37 °C in a humidified atmosphere containing 5% CO2.
RNase R digestion
Total RNA (5 μg) was incubated for 15 min at 37 °C with 3 U/ug of RNase R (Epicentre Biotechnologies, Madison, WI, USA). The RNase R digestion reaction was performed twice following previously published procedures .
200 ng total RNA extracted by TRIzol® reagent (Invitrogen, Carlsbad, CA, USA) and quantified by NanoDrop 2000 (Thermo Fisher Scientific) was reversely transcribed by ReverTra Ace qPCR RT Kit (Toyobo, Japan). Quantitative RT-PCR was performed on THUNDERBIRD SYBR® qPCR Mix (Toyobo). Briefly, the reaction was initiated in a 96-well optical plate at 94 °C. After 2 min, 30 cycles were conducted under the conditions of 94 °C for 30 s, 56 °C for 30 s and 72 °C for 1 min. Finally, the reaction ended at 72 °C for 10 min. The expression level was calculated by 2− △ △ CT method with GADPH and U6 as internal controls. The primers used for real-time PCR were shown in Table 2.
Plasmid vector pLO-ciR used for hsa_circ_0046264 overexpression, miR-1245 mimics, miR-1245 inhibitor and negative control miR-con were purchased from GENESEED (Guangzhou, China). SiRNAs for knockdown hsa_circ_0046264 was purchased from Geneseed Biotech (Guangzhou, China). The transfection was conducted using Lipofectamine™ 2000 (Invitrogen) in 6-well plates with 500 ng–1000 ng plasmid. The concentration of miR-1245 mimics or miR-1245 inhibitor was 30 nM–50 nM. The sequence of hsa_circ_0046264 was obtained from circbase.
Lung cancer cells transfected with hsa_circ_0046264 were plated into 96-well plates (1 × 103 cells / well). At 24, 48 and 72 h post-transfection, 10 μl MTT with the concentration of 5 mg/ml and pH of 7.4 were added into cells and cultured for 4 h at 37 °C, followed by removal of the culture medium and the addition of 100 μl dimethyl sulfoxide (DMSO, Sigma-Aldrich, St. Louis, MO, USA). The absorbance at 450 nm was measured with a microplate reader (Molecular Devices, Sunnyvale, CA, USA).
Lung cancer cells transfected with hsa_circ_0046264 were collected and treated with Annexin V-FITC/PI Cell Apoptosis Detection Kit (YEASEN, Shanghai, China) in accordance with the manufacturer’s instructions. Cell apoptosis was then detected by flow cytometry (FCM) FACS Calibur (BD Biosciences, CA, USA) and analyzed by software FACS Diva.
Invasive capacity was detected using Transwell cell culture inserts (8- mm pores; Corning, NY, USA) in 24-well plates. After transfection, cells were resuspended in serum-free medium and added to chambers coated with Matrigel (BD Biosciences). The bottom well contained growth medium with 20% FBS. After 48 h incubation, invaded cells were fixed with methanol and stained with hematoxylin. The invaded cells were counted under a microscope.
Dual luciferase reporter assay
The reporter vector pmirGLO (Crisprbio, Beijing, China) was inserted with hsa_circ_0046264 or 3’UTR sequence of BRCA2 (the sequence was obtained from UTRdb) to construct recombinant pmirGLO. HEK293 cells (Thermo Fisher Scientific) transfected with miR-1245 mimics or miR-con were seeded in 24-well plates and co-transfected with empty pmirGLO or recombinant pmirGLO for 48 h by using Lipofectamine™ 2000 (Invitrogen). Recombinant vectors containing wild types of hsa_circ_0046264 were named as WT. MUT1s were deletion mutations based on WT while MUT2s were point mutations. After transfection, cells were lysed by 1× Passive Lysis Buffer (80 μl for each well) and separated by centrifugation. Dual-Luciferase Reporter System (Promega, Madison, WI, USA) was applied to measure their Firefly and Renilla luciferase activities.
DNA damage assay
After transfected by hsa_circ_0046264 for 48 h, lung cancer cells were digested by pancreatin and fixed on glass slides by polylysine. The cells were incubated with 25 μM Etoposide for 5 h (Treated) or solvent-only for control (Non-treated). Cells were fixed with 4% formaldehyde (10 min) and then blocked in 1% BSA/10% normal goat serum/0.3 M glycine in 0.1% PBS-Tween for 1 h. The cells were then incubated with ab206900 staining Histone H2A.X (phospho S139) at 1/100 dilution (shown in red) overnight at 4 °C. Nuclear DNA was labelled in blue with DAPI. The fluorescence intensity was observed and photographed using a fluorescence microscope (Olympus, CX23, Japan).
Xenograft nude mouse model
Male BALB/c nude mice (n = 10, 5–8 weeks old, 18–20 g) were obtained from Experimental Animal Research Center of the Affiliated Calmette Hospital of Kunming Medical University. Empty or recombinant pLO-ciR was transfected into 95-D lung cancer cells, which was then injected into the posterior axilla of nude mice (1 × 107 cells / mL, 0.2 mL for each mouse). The mice were randomly divided into two groups: control group injected with empty pLO-ciR (n = 5) and over-circ group injected with recombinant pLO-ciR (n = 5). After 2 weeks, tumors were measured every week and calculated by the formula V = ab2/2 (a represents tumor length and b represents tumor width). After 7 weeks, mice were killed and tumors were collected and weighted. Total RNA of tumor tissues was extracted by TRIzol reagent for qRT-PCR. The tumor tissues were embedded by paraffin for immunohistochemistry. All procedures were performed following the ethical standards and under the protocol approved by the Affiliated Calmette Hospital of Kunming Medical University.
Tumor tissue sections from nude mice were deparaffinized and rehydrated with xylene and ethanol solutions, respectively. They were soaked in citrate buffer (pH = 6.0) and heated by microwave at 95 °C for 3 min twice to retrieve antigen and incubated in 3% H2O2 for 10 min after cooling down. Then sections were incubated with nonimmune goat serum for 15 min, followed by primary and secondary antibodies incubation at 4 °C for 12 h and 30–40 min respectively. The primary antibody was anti-BRCA2 (ab27976, Abcam, Cambridge, MA, USA) diluted to 1:100 and the secondary one was goat anti-rabbit IgG-HRP (1:1000, ab6721, Abcam). After washing by PBS, each section was added with 1 drop newly prepared diaminobenzidine for coloration (20 min) and hematoxylin for counterstain (30 s). Finally, after being dehydrated with ethanol, sections were transparentized by xylene, sealed with resinene and air dried for observation.
Software GraphPad Prism 6.0 was used for data analysis. Values were expressed by mean ± standard deviation. Student’s t test and One-Way ANOVA were used to evaluate significance between two groups and among multiple groups, respectively. All experiments were independently repeated three times. P < 0.05 meant statistically significance.
Hsa_circ_0046264 was down-regulated in lung cancer
Bioinformatic analysis screened out differential expressed circRNAs in lung cancer tissues (Fig. 1a) while 50 among them with the most significant differential expressions were displayed in Fig. 1b. Hsa_circ_0046264 was significantly down-regulated in tumor tissues (Fig. 1b). Low hsa_circ_0046264 level predicted a better survival outcome (Fig. 1c). The expression levels of hsa_circ_0046264 in lung cancer tissues with different tumor stages also proved its low expression, and further indicated that hsa_circ_0046264 expression decreased with the deterioration of lung cancer (Fig. 1d).
To further investigate the regulatory mechanism, 19 potential target miRNAs of hsa_circ_0046264 were screened out by the website circinteractome (Table 3). Furthermore, three binding sites of AGO2 protein (the protein that widely expresses in organisms and serves as a crucial composition of RNA induced silencing complex) on hsa_circ_0046264 were found (Table 4). The target gene of miR-1245 was determined as BRCA2 through the database miRTarBass. In both HLF-a and MRC-5 cell lines, after RNase digestion, the content of GAPDH significantly decreased, whereas the content of has_circ_0046264 did no significantly differ from that before RNase digestion (Fig. 1e and f). Compared with normal human lung cell lines MRC-5 and HLF-a, the expression of circ_0046264 was much lower in human lung cancer cell lines A549 and 95-D (Fig. 1g).
Hsa_circ_0046264 overexpression down-regulated miR-1245 and up-regulated BRCA2
The expression of miR-1245 was much higher, whereas the expression of BRCA2 mRNA was much lower in III + IV grade cancer tissues than in I + II cancer tissues (Fig. 2a and b). We have verified the target relationship between circ_0046264 and miR-1245 as well as miR-1245 and BRCA2. The deletion mutation (MUT1) and point mutation (MUT2) of circ_0046264 and BRCA2 were used to be as the control of wild type vectors (WT) which showed significant suppressions of luciferase activity by miR-1245(Fig. 2c and d). The transfection efficiency of circ264, sicirc, miR-1245 and antimiR-1245 were tested in both A549 and 95-D cell lines (Fig. 2e and f, h and i). In addition, the influence of modulation of circ_0046264 and miR-1245 expression on BRCA expression was investigated. The results showed that the overexpression of circ_0046264 or the suppression of miR-1245 promoted the expression of BRCA2, whereas the suppression of circ_0046264 led to the suppression of BRCA2 expression (Fig. 2g, j, 3a).
Hsa_circ_0046264 overexpression suppressed lung cancer development in vitro
Overexpression of hsa_circ_0046264 or suppression of miR-1245 significantly suppressed the invasion and viability of lung cancer cells; and the suppression of hsa_circ_0046264 or the overexpression of miR-1245 significantly suppressed cell invasion and viability (Fig. 3b, 4a and b). On the contrary, the apoptosis of cancer cells was promoted after being transfected with circ_46264 and inhibited after the cells were knocked down of circ_46264. The overexpression of miR-1245 significantly enhanced cell apoptosis as well (Fig. 4c and d). Besides, γ-H2AX is a marker protein of DNA double-strand damage. The DNA damage of lung cancer cells was also aggravated as more γ-H2AX was observed in circ264 group (Additional file 1: Figure. S1). In brief, the suppressive effect of hsa_circ_0046246 in lung cancer was proved by the in vitro experiments.
Hsa_circ_0046264 overexpression inhibited tumor growth in vivo
Lung tumors formed in nude mice of hsa_circ_0046264 overexpression group were much smaller than that formed in control group (Fig. 5a). Similarly, hsa_circ_0046264 overexpression also diminished the tumor weight (Fig. 5b). The tumor tissues obtained from the nude mice had an elevated expression level of hsa_circ_0046264 in circ264 group, accompanied by lower miR-1245 and higher BRCA2 expression levels (Fig. 5c and d). The protein expression level of BRCA2 also increased, once again proving the up-regulation effect of hsa_circ_0046264 on BRCA2 expression (Fig. 5e).
Significant down-regulation of hsa_circ_0046264 was found in lung cancer tissues. Overexpression of hsa_circ_0046264 effectively suppressed the proliferation and invasion of lung cancer cells, induced apoptosis. MiR-1245 was suppressed by hsa_circ_0046264, while BRCA2, the target gene of miR-1245, was up-regulated. Hsa_circ_0046264 inhibited lung cancer development through acting as a ceRNA which regulated miR-1245 and indirectly activated BRCA2.
Hsa_circ_0046264 and BRCA2 were lowly expressed in lung cancer tissues while miR-1245 was high expressed. Hsa_circ_0046264 could bind miR-1245, and since BRCA2 was the target gene of miR-1245, BRCA2 was indirectly up-regulated by hsa_circ_0046264. The regulatory effect of miR-1245on BRCA2 expression has been reported in previous study as the 3’UTR region of BRCA2 was combined with miR-1245 . We confirmed the target relationship between miR-1245 and BRCA2, and further uncovered their associations with hsa_circ_0046264. Circular RNAs affect cancer processes mainly by serving as ceRNAs, which cross-talk and co-regulate with other genes by competing for binding of miRNAs . CeRNAs involve in the pathogenesis of various common cancers . Based on the altered genes in patients with lung cancer, Jin et al. established a competing endogenous network with several miRNAs and their interacting circRNAs . Here, hsa_circ_0046264 and BRCA2 shared common target miRNA, miR-1245, and up-regulation of miR-1245 in lung cancer resulted from the low expression of hsa_circ_0046264 caused the down-regulation of BRCA2.
The biological functions of hsa_circ_0046264 were inspected in detail in this study. Hsa_circ_0046264 expression was decreased with the deterioration of lung cancer. Overexpression of hsa_circ_0046264 attenuated proliferation, aggravated apoptosis and DNA damage of lung cancer cells as well as inhibited tumor growth. Although circRNAs were suggested to be associated with some kinds of common human cancers, such as circRNAs TCF25 and MYLK in bladder cancer [22, 23], hsa_circ_0005986 and hsa_circ_0004018 in hepatocellular carcinoma [22, 24] and hsa_circ_0000520 in gastric cancer , little is known about the roles circRNAs play in lung cancer. Zhao et al. investigated the expression profiles of circRNAs in early-stage lung adenocarcinoma and found that 357 circRNAs were dysregulated and five most significant ones were demonstrated as potential biomarkers . CircRNA ITCH inhibited the activation of Wnt/β-Catenin signaling pathway in lung cancer cells by down-regulating ITCH, thus restraining cancer cell proliferation . In contrast, hsa_circ_0013958 and hsa_circ_0000064 were up-regulated in lung cancer, and their aberrant expressions promoted migration and invasion activities of lung cancer cells and attenuated apoptosis [11, 27]. In this study, we identified a novel tumor suppressive circRNA, hsa_circ_0046264. Both in vitro and in vivo results proved its inhibitory effect on the deterioration of lung cancer, suggesting that hsa_circ_0046264 may be a potential target in lung cancer treatment.
Overexpression of hsa_circ_0046264 could diminish the volume and weight of lung tumors formed in nude mice. Meanwhile, miR-1245 expression was reduced in tumor tissues obtained from mice in hsa_circ_0046264 overexpression group, and the mRNA and protein expressions of BRCA2 were elevated. These results implied that miR-1245 is a potential tumor promotor and BRCA2 is a suppressor. The influence of miR-1245 in lung cancer has not been identified yet. As for BRCA2, it was considered as a susceptibility gene whose mutation was frequently found in breast cancer and ovarian cancer [28, 29]. In lung cancer, Yang et al. suggested that it was associated with a high risk of lung adenocarcinoma . However, according to Lin et al.’s research, polymorphism of rs144848 in BRCA2 could reduce the lung cancer risk . In this study, we found BRCA2 was down-regulated in lung cancer tissues and supposed that it was a suppressive gene.
In summary, hsa_circ_0046264 was proved to be able to inhibit viability and invasion, induce apoptosis of lung cancer cells. It was down-regulated in tumor tissues and successfully restrained tumor growth in vivo. The suppressive effect of hsa_circ_0046264 resulted from its combination with miR-1245, which could indirectly up-regulate miR-1245’s target gene, BRCA2. The results demonstrated that hsa_circ_0046264 may be a novel target in lung cancer.
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This work was supported by the National Natural Science Foundation of China (No. 81760519 and No. 31360223).
Availability of data and materials
99 lung cancer tissue specimens, containing 23-paired specimens, were obtained from Affiliated Calmette Hospital of Kunming Medical University (Yunnan, China).
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This study was approved by the Ethical Review Board for Research in the Affiliated Calmette Hospital of Kunming Medical University.
The authors declare that they have no competing interests.
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Additional file 1:
Figure S1. Hsa_circ_0046264 overexpression promoted DNA damage in vitro. (A) The expression of γ-H2AX in circ264 group was significantly higher than in control group in A549 cells. (B) The expression of γ-H2AX in circ264 group was significantly higher than in control group in 95-D cells (TIF 9699 kb).
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Yang, L., Wang, J., Fan, Y. et al. Hsa_circ_0046264 up-regulated BRCA2 to suppress lung cancer through targeting hsa-miR-1245. Respir Res 19, 115 (2018). https://doi.org/10.1186/s12931-018-0819-7
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