- Open Access
Impact of radiologically stratified exacerbations: insights into pneumonia aetiology in COPD
Respiratory Researchvolume 19, Article number: 143 (2018)
COPD patients have increased risk of developing pneumonia, which is associated with poor outcomes. It can be symptomatically indistinguishable from exacerbations, making diagnosis challenging. Studies of pneumonia in COPD have focused on hospitalised patients and are not representative of the ambulant COPD population. Therefore, we sought to determine the incidence and aetiology of acute exacerbation events with evidence of pneumonic radiographic infiltrates in an outpatient COPD cohort.
One hundred twenty-seven patients with moderate to very severe COPD aged 42–85 years underwent blood and sputum sampling over one year, at monthly stable visits and within 72 h of exacerbation symptom onset. 343 exacerbations with chest radiographs were included.
20.1% of exacerbations had pneumonic infiltrates. Presence of infiltrate was highly seasonal (Winter vs summer OR 3.056, p = 0.027). In paired analyses these exacerbation events had greater increases in systemic inflammation. Bacterial detection rate was higher in the pneumonic group, with Haemophilus influenzae the most common bacteria in both radiological groups. Viral detection and sputum microbiota did not differ with chest radiograph appearance.
In an outpatient COPD cohort, pneumonic infiltrates at exacerbation were common, and associated with more intense inflammation. Bacterial pathogen detection and lung microbiota were not distinct, suggesting that exacerbations and pneumonia in COPD share common infectious triggers and represent a continuum of severity rather than distinct aetiological events.
Trial registration Number: NCT01360398.
Acute exacerbations of COPD are associated with impaired quality of life, accelerated lung function decline and place considerable burden on health-care resources [1,2,3]. They are typically inflammatory events [4, 5], triggered by bacterial and viral infection , often requiring treatment with antibiotics and oral corticosteroids (OCS) either in an ambulatory setting, or less frequently in hospital . As a result, they have become a key target for intervention in COPD. With this recognition, the emergence of symptom, pathogen and biomarker-guided strategies now offers scope to phenotype exacerbations, potentially allowing for tailored management approaches .
Pneumonia is more common in patients with COPD , and can be clinically indistinguishable from exacerbations. Numerous factors associated with pneumonia risk have been reported in COPD, including inhaled corticosteroid (ICS) use, comorbidity and nutritional status [10, 11]. COPD patients requiring hospitalisation for acute respiratory tract illness, often have complicating pneumonic infiltrate evident on chest radiograph (CXR) . Moreover, these hospitalised episodes are associated with more intense inflammatory responses, differing pathogen profiles and often lead to longer hospital stays and increased rates of readmission [13,14,15]. This raises important treatment dilemmas, particularly around the use of OCS, risk-stratification for ICS and antibiotic usage. This is particularly relevant in the era of emerging antimicrobial resistance, where clinical strategies to better stratify and target antibiotics effectively are vital.
Validating a diagnosis of pneumonia requires the radiographic identification of pulmonary infiltrate in the context of symptoms of a respiratory tract infection which to date, has largely limited its study to hospitalised events. Given that only a comparatively small proportion of exacerbations require hospitalisation , our understanding of the frequency, nature and impact of pneumonic infiltrates complicating non-hospitalised exacerbations is currently lacking.
In a secondary analysis of the Acute Exacerbation and Respiratory InfectionS in COPD (AERIS) cohort, a prospective, longitudinal study of outpatients with COPD, we used radiological stratification to provide a detailed insight into the aetiology and character of exacerbations complicated by pneumonic change.
Study design and measurements
The AERIS study (ClinicalTrials.gov NCT01360398) was a prospective, observational cohort study conducted at the University Hospital Southampton, UK. The study protocol has been described previously . Eligible patients with ≥1 treated exacerbation in the year prior to enrolment, and a confirmed diagnosis of COPD from a post-bronchodilator forced expiratory volume in 1 s (FEV1)/Forced vital capacity (FVC) ratio of < 0.7, were recruited. Patients on long-term antibiotic and/or OCS therapy were not eligible for inclusion. For full inclusion/exclusion criteria see Additional file 1. The study was conducted in accordance with the Declaration of Helsinki and Good Clinical Practice, and was approved by the Southampton and South West Hampshire Research Ethics Committee. All participants provided written informed consent.
Patients were followed monthly in the stable-state and reviewed within 72 h of exacerbation symptom onset. Exacerbations were detected using daily electronic diary cards. The definition and severity of exacerbations, has been previously described [6, 17]. All events were managed as an exacerbation from the outset, as judged appropriate by the clinical team, in accordance with local guidelines. Exacerbation onset date was used to describe seasonality with winter defined as December–February, spring as March–May, summer as June–August and autumn as September–November.
Posterior-anterior CXRs performed at acute visits, were reported by a blinded, designated thoracic radiologist (SH), with a randomly selected subset (n = 100) reported independently by a second, blinded thoracic radiologist (AA). Pneumonic infiltrates were characterised as acinar (lobar) or reticulo-nodular. Multiple exacerbations with pneumonic infiltrate in the same individual, were included if the infiltrate was new.
Sample collection and analysis
Spontaneous or induced sputum samples were processed as previously described [6, 18, 19]. Sputum was cultured for bacteria and analysed by polymerase chain reaction (PCR) for bacterial and viral detection, monthly and at exacerbation (See Additional file 1: Supplementary methods). Blood analysis included differential white cell count, C-reactive protein (CRP), fibrinogen and procalcitonin (PCT) at study entry, exacerbation and at quarterly visits throughout the year.
We have extensively analysed the microbiome of the AERIS cohort and the in-depth analysis of correlations with disease severity and exacerbation phenotype have been previously reported . In the current sub-analysis, we investigated whether there were differences in the abundance of specific phyla and genera in exacerbations with and without pneumonic infiltrate. For the microbiome analysis, genomic DNA was extracted from sputum using the MagNA Pure 96 DNA Volume Kit (Roche Diagnostics), according to the manufacturer’s instructions. The conserved V4 region of the 16S rRNA gene was amplified and sequenced on an Illumina MiSeq sequencer. Sequenced reads were filtered for quality and processed using the QIIME (quantitative insights into microbial ecology) pipeline version 1.8.0. Operational taxonomic units (OTUs) were subsequently clustered from chimera-cleaned reads at a 97% identity threshold and assigned taxonomy using the GreenGenes 16S RNA sequence database (version 13.8). For further methodological detail, see Additional file 1.
Analyses were performed using SPSS version 22 (Armonk, NY:IBM Corp) and Stata version 14 (Stata Corporation, College Station, TX, USA). The sample size calculation for the AERIS study has been described previously . Categorical data are presented as frequency, percentage (%) and were compared using the Chi-square test or Fisher’s exact test as appropriate. Continuous data are presented as mean, standard deviation (SD) if normally distributed and median, interquartile range (IQR) if not. Means were compared using the independent sample t-test and medians using the Mann-Whitney U test. For paired analyses comparing pre-exacerbation with exacerbation samples and stratifying by presence/absence of infiltrate, the Wilcoxon signed rank test was used. Clustered multivariate logistic regression, including the subject as a random effect, was used to account for individual patients having multiple exacerbations. Presence of pneumonic infiltrate at exacerbation was designated the dependent variable. Other factors judged by univariate analysis or, a priori to be of clinical importance were included as independent variables. P-values of < 0.05 were considered statistically significant. All analyses should be considered post hoc as they were not pre-specified in the AERIS statistical analysis plan.
Patient characteristics and exacerbations
One hundred twenty-seven patients were enrolled (Fig. 1). The mean (SD) age was 66.8 ± 8.6 and 68 (53.5%) were male. At study entry 45, 40 and 15% had GOLD stage II, III and IV respectively, with a mean (SD) post-bronchodilator FEV1% predicted of 46.4 ± 15.2 Bronchiectasis, which was assessed at enrolment by high resolution CT, was identified in only a minority of patients (10 of 127; 7.9%) (Table 1).
Three hundred fifty-five exacerbation visits from 108 patients were studied. The mean annual exacerbation rate was 3.04 (95% CI 2.63–3.50) per patient. 8 exacerbations did not have a CXR and 4 had evidence of persisting infiltrate and were therefore excluded, leaving 343 exacerbations for analysis. Only 19 (5.5%) of these events required hospitalisation. The Kappa agreement for the subset of CXRs analysed independently by two clinical reviewers was 0.968.
Overall, 69 (20.1%) exacerbations had a new pneumonic infiltrate (For other radiological findings, see Additional file 2: Table S1). 61 (88%) infiltrates were considered reticulo-nodular and 8 (12%) lobar in character. 95.7% of exacerbations with pneumonic infiltrate were outpatient managed. 43 were treated with both antibiotics and OCS, 11 with antibiotics alone, 10 with OCS alone and 5 required no systemic treatment (Additional file 2: Table S2). Table 2 shows the clinical characteristics of exacerbations.
Forty-six (36.2%) patients had ≥1 exacerbation with pneumonic infiltrate and 81 (63.8%) did not. In order to identify baseline factors that may predict risk of future exacerbations with infiltrate, these groups were compared. No significant differences in age, sex or smoking status were observed and ICS use was similar. However, greater disease severity (FEV1 (%) 41.7 versus 49.2; p = 0.007) and poorer six minute walk distance (256.6 m versus 320.1 m; p = 0.002) were associated with having one or more exacerbations with pneumonic infiltrate during the study (Table 3).
Seasonality of exacerbation groups
Considering all exacerbations (n = 343), significant variability was observed across the seasons, with 33.8% occurring in winter, 25.9% in autumn, 23.0% in spring and 17.2% in summer (p < 0.001) (Fig. 2a). Exacerbations with infiltrate were highly prevalent in winter, constituting almost a third of all exacerbations during that season (Fig. 2b).
Pneumonic infiltrates and microbial aetiology
308 (89.8%) exacerbations had available sputum for bacterial culture, 295 (86.0%) for bacterial PCR and 294 (85.7%) for viral PCR. Overall, 69.8% of exacerbations with pneumonic infiltrate and 57.1% of exacerbations without had bacteria detected by culture (p = 0.067). For PCR-detected bacteria, corresponding proportions were 77.0 and 65.4% respectively for exacerbations with and without pneumonic infiltrate (p = 0.082). Haemophilus influenzae (HI) was the most frequently identified bacteria by both culture (52.4% of exacerbations with, versus 38.0% without infiltrate, p = 0.038) and PCR (62.3% of exacerbations with, versus 52.4% without infiltrate, p = 0.165). A separate analysis, including only sputum considered high quality (fewer than 30% squamous cells) yielded similar results (Additional file 2: Table S3). Streptococcus pneumoniae (SP) was detected by culture in 11.1% (n = 7) of exacerbations with, and 16.3% (n = 40) without pneumonic infiltrate (p = 0.305) (Additional file 2: Table S4 and Figure S1). PCR detected only 19 (8.2%) cases of SP at exacerbations without infiltrate, accounted for by the identification of the closely related species, Streptococcus pseudopneumoniae by PCR, which was not differentiated by culture . Of those with lobar infiltrate (n = 8), 5 (62.5%) were associated with bacterial detection, 4 of which were HI, whilst SP was not detected.
Viruses were identified in similar proportions between exacerbation groups (n = 25 (41.7%) with, versus n = 101 (43.2%) without infiltrate; p = 0.835), with rhinovirus predominating. There were no differences in bacterial-viral co-infection rates by either bacterial culture-viral PCR (n = 18 (30.0%) with, versus n = 58 (24.8%) without infiltrate; p = 0.411) or bacterial PCR-viral PCR (n = 21 (35.0%) with, versus n = 68 (29.1%) without; p = 0.372).
Using a subset of 205 exacerbations with paired preceding stable visits and available sputum, (n = 38 (18.5%) with and n = 167 (81.5%) without infiltrate), acquisition of bacteria not seen at the previous stable visit occurred in 37.6%. There were no differences in the rate of new bacterial acquisition between exacerbations with and without pneumonic infiltrate (n = 15 (39.5%) versus n = 62 (37.1%) respectively; p = 0.787).
Pneumonic infiltrates and the microbiome
Firmicutes, Proteobacteria and Bacteroidetes were the most abundant phyla and Veillonella, Haemophilus, Streptococcus and Prevotella the most abundant genera identified at exacerbation. Stratifying by presence or absence of pneumonic infiltrate did not identify any significant differences in the main phyla (p = 0.350), genera (p = 0.540) nor in Shannon diversity between exacerbation groups. (Fig. 3 and Additional file 2: Figure S2).
Pneumonic infiltrates and inflammatory responses
When considering all exacerbations, those with pneumonic infiltrates had significantly greater systemic inflammation (p < 0.001 for CRP, fibrinogen and neutrophil count), than those without (Table 2). In exacerbations with available high quality sputum (n = 209), pneumonic infiltrate was associated with an increased sputum neutrophil percentage (89.6 versus 79.1, p = 0.007). CRP had the greatest area under the receiver operator curve (0.692) for distinguishing exacerbations with infiltrate (Additional file 2: Figure S3).
Inflammation can vary at baseline, therefore a paired analysis comparing pre-exacerbation (stable visit) with exacerbation samples was performed for 193 exacerbations. The median (IQR) time between stable and exacerbation samples was 42 (39) days for those with pneumonic infiltrate and 38 (46) days for those without (p = 0.328). All markers analysed, increased at exacerbation. However, exacerbations with pneumonic infiltrate had a significantly higher median CRP (19.0 versus 7.0 mg/L; p < 0.001), fibrinogen (5.8 versus 5.0 g/L; p < 0.005), blood neutrophil count (7.7 versus 5.3 109L; p < 0.001) (Fig. 4 and Additional file 2: Table S5) and greater median changes from stable-state than those without (Additional file 2: Table S6). For PCT, although greater increases were observed from stable-state in those exacerbations with infiltrate compared to those without, PCT was otherwise not a good discriminatory marker. A separate paired analysis (Additional file 2: Table S7), using only the first infiltrate-associated exacerbation where available, or the first non-infiltrative exacerbation where not (subjects were therefore represented only once), yielded similar results. Infiltrate character did not appear to influence inflammatory responses.
Lung function changes at exacerbation
Paired lung function was available for 239 exacerbations. To highlight clinical severity, infiltrate-associated exacerbations were associated with greater falls in FEV1 than those without (− 125 ml versus -40 ml, p = 0.010). A similar trend was also seen for FVC, although this did not reach significance (Additional file 2: Table S8).
Predicting pneumonic infiltrate at exacerbation
Factors significantly associated with increased odds of having pneumonic infiltrate at exacerbation were winter season (OR 3.056, 95%CI 1.139–8.200, p = 0.027) and greater CRP levels (categorised by tertiles) at exacerbation (OR 5.723, 95%CI 2.273–14.407, p < 0.001 for a CRP > 18 versus < 6 mg/L). Cold and/or sore throat symptoms were associated with reduced odds of having pneumonic infiltrate (OR 0.435, 95%CI 0.223–0.847, p = 0.014) (Table 4).
In this prospective study of outpatients with moderate to very severe COPD, we show that exacerbations with new pneumonic infiltrates were associated with heightened levels of systemic inflammation, greater lung function deterioration and similar microbiological signatures, compared to exacerbations without. Importantly, more than 94% of exacerbations were managed as an outpatient, therefore providing a unique insight into the incidence and significance of pneumonic infiltrate in this clinical setting.
Recent interest has focused on understanding the heterogeneity of exacerbations . Although the use of CXR has been reported in hospitalised COPD patients [13, 21, 22], few prospective studies report on its use in such a well-characterised outpatient COPD cohort, and none addressing the microbiological and inflammatory complexities of exacerbations to the extent of the AERIS study. The only other large COPD study collecting radiological data at exacerbation, did not report on inflammatory or microbiological indices . Although having a similar patient demographic, the differing primary objectives and aims make direct comparisons to our study difficult.
Pneumonic infiltrates were a feature in approximately 20% of exacerbations. Furthermore, half of all infiltrate-associated exacerbations occurred during the winter, and proportionally were a feature in around a third of all exacerbations occurring during that period, therefore contributing considerably to the exacerbation-burden during this time of year. In multivariate analysis seasonality remained an important determinant, with greater odds of having an exacerbation with infiltrate in winter, compared to summer. The seasonal nature of exacerbations and of pneumonia in COPD has previously been described [6, 11, 24, 25]. Population behaviours, changes in temperature and humidity, as well as cyclical patterns of respiratory pathogens have all been proposed as key determinants . Understanding whether seasonality could direct exacerbation treatment approaches remains to be seen, but characterising exacerbations using methods such as CXR could guide this approach.
Exacerbations are typically inflammatory events . In this study, exacerbations with pneumonic infiltrate were associated with greater airway neutrophillic inflammation and showed more intense systemic inflammatory responses than exacerbations without. Additionally, significant decreases in FEV1 at exacerbation onset were seen in those with pneumonic infiltrate. This observed decline, provides a measure of exacerbation severity and may be directly associated with the greater inflammatory responses identified. Neutrophilic inflammation has previously been shown to correlate with greater decreases in lung function during exacerbation [27, 28], but these studies did not utilise radiological stratification.
The intensity of systemic inflammation at exacerbation has previously been linked to the presence of bacteria , bacterial strain changes  and bacterial-viral co-infection . In agreement with prior studies [30, 31], we have previously reported a substantial number of exacerbations associated with viral detection within this cohort . However, overall the proportion of viral-associated exacerbations with and without pneumonic infiltrate was broadly similar and viral symptoms (cold and/or sore throat) occurred less frequently in exacerbations with pneumonic infiltrate.
Bacteria, particularly HI, have long been regarded as an important cause of exacerbations . Conversely, studies of hospitalised pneumonia in COPD patients consistently report SP as the most frequently implicated bacteria [13, 22], similarly for hospitalised pneumonia in patients without COPD . Like previous studies, our data re-confirms HI as the most frequently detected bacteria at exacerbation, but additionally suggests a potential association between HI and pneumonic infiltrate. By culture, HI was implicated in 52% of exacerbations with infiltrate compared to 38% of those without. However, as HI commonly causes chronic infection in COPD even at stable-state, establishing a causal link between HI detection at exacerbation and risk of pneumonic infiltrate is challenging. In this regard, although new bacterial acquisition did not appear to be associated with pneumonic infiltrate, bacterial strain changes and increasing load of existing pathogens could be key mechanisms, having previously been implicated in exacerbation development and more profound inflammatory responses [28, 29].
This study adds to the evolving exploration of exacerbation heterogeneity, using radiological stratification in an outpatient COPD population. Current practise varies on whether an acute respiratory illness, complicated by pneumonic infiltrate in COPD patients is included under the diagnosis of exacerbation or considered as pneumonia. There is some evidence to suggest that exacerbations and pneumonia in COPD differ in their aetiology and inflammatory profile and should perhaps be considered distinct, despite being clinically hard to distinguish [13, 33]. Our findings suggest that the infective aetiology of exacerbations is similar to that of acute events classified as pneumonia in an outpatient clinical setting. The results suggest common mechanisms between pneumonia and exacerbations in patients with COPD and will help to inform exacerbation management.
We recognise that this study has limitations. The use of CXR remains the radiological standard for diagnosing pneumonia, and yet false-positive and false-negative results can occur . CT scanning, may improve diagnostic accuracy, but is currently more expensive, less readily available and associated with greater radiation dose than plain CXR, making its utilisation currently unfeasible in a study of frequent exacerbators.
The mean exacerbation rate in AERIS reflects the selected cohort of patients with a history of frequent exacerbations. We accept that our findings may not be generalizable to more heterogeneous groups, or those that infrequently exacerbate. Nevertheless, like other studies, the exacerbation rate for the cohort was similar to that in the year prior to enrolment, suggesting a fairly constant phenotype rather than an overestimation of exacerbations [35, 36].
There are well-established links between ICS use and increased pneumonia risk in COPD [10, 37]. In our cohort, the majority of patients were already prescribed ICS at enrolment, limiting our ability to assess the impact of ICS use on the risk of developing pneumonic infiltrates. We also acknowledge that differing methodological approaches for determining aetiology, may limit direct comparisons with other studies. However, like a recent report of hospitalised pneumonia, not limited to COPD patients , we utilised sputum for microbiological analysis and similarly identified HI as the most frequently detected bacteria. This contrasts with many other studies of COPD patients hospitalised with pneumonia, where an aetiological diagnosis was predominantly made from blood culture, urinary antigen testing or serological analysis and was typically found to be SP [13, 21]. However, due to the early identification and treatment of exacerbations, we cannot exclude the possibility that bacteria such as SP may have a role in the later stages of pneumonic exacerbations. Additionally, the use of electronic diary cards and consequently the early capture of exacerbations, may underestimate the frequency of complicating pneumonic infiltrates, as radiological changes in the context of acute lower respiratory tract illness can lag behind clinical symptoms .
This is the first prospective study to radiologically stratify exacerbations and demonstrate the incidence, seasonality and character of acute events characterised as pneumonia in an outpatient COPD cohort. That pneumonia is common in this clinical context, associated with heightened levels of systemic inflammation, greater lung function deterioration and a similar infective aetiology to exacerbations, is highly relevant clinically. These results suggest that exacerbations and pneumonia in COPD share common infectious triggers and represent a continuum of severity rather than distinct aetiological events. This knowledge will help to inform exacerbation management, particularly important in an era of emerging antimicrobial resistance and antibiotic governance. Based on these findings, interventional studies, testing the utility of radiological and inflammatory stratification of exacerbations to assess optimal response to standard treatments are required.
Acute Exacerbations and Respiratory Infections in COPD study
Chronic obstructive pulmonary disease
Forced expiratory volume in 1 s
Forced vital capacity
Global initiative for chronic obstructive lung disease
Operational taxanomic units
Polymerase chain reaction
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The authors would like to thank all the study volunteers for their invaluable contribution towards furthering COPD knowledge and each team member for their assistance conducting the study. We acknowledge all members of the AERIS study group. The authors would also like to thank Geraldine Drevon and Regis Azizieh (XPE Pharma & Science, on behalf of GSK Vaccines) for coordination and editorial support. The study was funded by GlaxoSmithKline Biologicals SA.
The AERIS Study Group:
J Alnajar, R Anderson, E Aris, WR Ballou, A Barton, S Bourne, M Caubet, SC Clarke, D Cleary, C Cohet, NA Coombs, K Cox, J-M Devaster, V Devine, N Devos, E Dineen, T Elliot, R Gladstone, S Harden, J Jefferies, V Kim, C Lambert, S Mesia-Vela, P Moris, K Ostridge, TG Pascal, M Peeters, S Schoonbroodt, KJ Staples, A Tuck, L Welsh, V Weynants, TMA Wilkinson, AP Williams, NP Williams, C Woelk, M Wojtas, S Wootton. All members of the AERIS Study Group were involved in the planning, conduct, and/or reporting of the work described in the article.
The study was funded by GlaxoSmithKline Biologicals SA. No restrictions were placed on authors regarding the statements made in the manuscript.
Ethics approval and consent to participate
The study was approved by the Southampton and South West Hampshire Research Ethics Committee. All participants provided written informed consent.
Consent for publication
TMAW has received reimbursement for travel and meeting attendance from Boehringer Ingelheim and AstraZeneca, outside of the submitted work. SB received grants and assistance in travel to conferences from GSK outside of the submitted work. SCC received a grant from Pfizer outside of the submitted work. KJS received grants from Asthma UK (08/026) and BMA HC Roscoe Award outside of the submitted work, and he has a patent PCT/GB2010/050821 “Ex Vivo Modelling of Therapeutic Interventions” pending. EA, JMD and CL are employees of the GSK group of companies. EA and JMD hold shares/restricted shares in the GSK group of companies. KJS, VK, NPW, KO, SW, and TMAW received an institutional grant from the GSK group of companies to conduct this study. AW, NAC, SH and AT declare no conflict of interest.
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AERIS study subject inclusion and exclusion criteria and supplementary methods. (DOCX 58 kb)
Table S1. Radiological findings at exacerbation. Table S2. Exacerbation treatment stratified by the presence or absence of radiographic pneumonic infiltrate. Table S3. Bacterial identification by culture and PCR in all exacerbation sputum samples and those exacerbation sputum samples with fewer than 30% squamous cells (considered high quality). Table S4. Bacterial and viral identification at exacerbation by culture (bacteria) and PCR (bacteria/viral). Table S5. Levels of inflammatory markers at paired stable and exacerbation visits. Table S6. Changes in levels of serum inflammatory markers between stable (pre-exacerbation) and exacerbation samples. Table S7. Levels of serum inflammatory markers at paired stable and exacerbation visits. The occurrence of the first infiltrate-associated exacerbation where available was prioritised, or first non-infiltrative exacerbation if not (subjects are therefore only represented once). Table S8. Lung function changes between nearest stable-state and exacerbation visits, stratified by the presence/absence of pneumonic infiltrate. Figure S1. The proportion of bacterial positive sputum samples at exacerbation by both culture and PCR. Figure S2. The lung microbiome (phylum) of exacerbations stratified by the presence or absence of pneumonic infiltrate. Figure S3. Area under the receiver operator curve analysis for CRP, fibrinogen and neutrophil count. (DOCX 232 kb)