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Table 2 Significant common functional clusters biological process related to pulmonary function by GREAT using binomial test

From: Genome-wide DNA methylation analysis of pulmonary function in middle and old-aged Chinese monozygotic twins

Term name

Binom raw P-value

Binom FDR Q-value

Binom fold enrichment

Binom expected region hits

Binom observed region hits

FEV1

     

 Negative regulation of phospholipid biosynthetic process

2.30E−112

2.40E−108

22.67703

5.159407

117

 Platelet-derived growth factor binding

1.75E−66

6.45E−63

6.609811

21.48322

142

 Potassium:chloride symporter activity

2.13E−59

2.62E−56

27.73878

2.018834

56

 Epithelial-mesenchymal cell signaling

3.35E−57

3.18E−54

6.273671

20.24333

127

 Decreased serum estradiol

2.18E−47

2.23E−44

21.93261

2.234116

49

 Low voltage-gated calcium channel activity

1.91E−44

1.41E−41

18.17954

2.750345

50

 cAMP response element binding protein binding

1.41E−38

5.76E−36

9.067368

7.058278

64

 Activation of Cdc42 GTPase activity

3.30E−36

5.30E−34

12.54469

3.906035

49

 Ceramide signaling pathway

3.85E−33

1.69E−30

2.874993

61.21754

176

 Transcription regulation by bZIP transcription factor

2.38E−29

3.61E−27

3.509946

33.04894

116

 Mitogen-activated protein kinase p38 binding

9.76E−16

5.81E−14

6.090298

5.418454

33

 Notch signaling pathway

3.93E−13

9.97E−12

2.123615

54.15295

115

FVC

     

 Activation of Cdc42 GTPase activity

5.16E−82

5.39E−78

20.93006

4.204478

88

 Potassium:chloride symporter activity

1.08E−73

1.99E−70

30.83174

2.173085

67

 Negative regulation of phospholipid biosynthetic process

1.82E−54

5.77E−52

13.14459

5.553615

73

 Epithelial-mesenchymal cell signaling

1.61E−45

3.29E−43

5.323534

21.79004

116

 Decreased serum estradiol

2.81E−43

1.92E−40

19.54412

2.404816

47

 Platelet-derived growth factor binding

3.14E−36

1.05E−33

4.583852

23.12466

106

 Low voltage-gated calcium channel activity

1.08E−35

3.33E−33

14.86242

2.960487

44

 Transcription regulation by bZIP transcription factor

1.57E−31

2.39E−29

3.513795

35.57407

125

 Notch signaling pathway

4.40E−29

1.16E−26

2.856257

54.26683

155

 cAMP response element binding protein binding

1.22E−19

1.05E−17

5.791325

7.597571

44

 Mitogen-activated protein kinase p38 binding

3.38E−17

2.04E−15

6.172357

5.832456

36

 Ceramide signaling pathway

1.07E−13

4.56E−12

2.033541

65.89492

134

FEV1/FVC

     

 Negative regulation of phospholipid biosynthetic process

7.31E−162

7.63E−158

24.44504

6.708927

164

 Platelet-derived growth factor binding

3.83E−103

1.41E−99

7.338399

27.93525

205

 Epithelial-mesenchymal cell signaling

2.93E−64

1.18E−61

5.812409

26.32299

153

 Activation of Cdc42 GTPase activity

3.00E−58

8.25E−56

14.56942

5.079131

74

 Low voltage-gated calcium channel activity

9.99E−55

6.14E−52

17.61571

3.576354

63

 Ceramide signaling pathway

5.35E−44

3.53E−41

2.914465

79.60295

232

 Potassium:chloride symporter activity

7.68E−43

1.89E−40

18.28468

2.625149

48

 Decreased serum estradiol

5.03E−36

1.55E−33

15.14585

2.905086

44

 cAMP response element binding protein binding

9.55E−35

1.76E−32

7.299999

9.178084

67

 Notch signaling pathway

4.98E−31

9.39E−29

2.730495

65.55589

179

 Transcription regulation by bZIP transcription factor

2.74E−27

4.16E−25

3.04832

42.9745

131

 Mitogen-activated protein kinase p38 binding

1.19E−21

7.41E−20

6.386807

7.045774

45