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Table 3 Lung transcripts (34 genes) consistently increased (12) or decreased (22) across embryonic stage 18 (E18), postnatal stage (P) 28 and P70 in JF1/MsJ (JF1) mice compared to C3H/HeJ (C3H)

From: Transcriptomic analysis comparing mouse strains with extreme total lung capacities identifies novel candidate genes for pulmonary function

Gene Name

Gene symbol

Entrez ID

Probeset

Fold Difference

E18

P28

P70

Glutaredoxin 3

Glrx3

30,926

6,923,313

12.22

6.08

3.27

RIKEN cDNA G730007D18 gene

G730007D18Rik

100,038,502

7,006,004

3.66

2.87

2.41

Holliday junction recognition protein

Hjurp

381,280

6,760,490

3.58

2.09

2.20

Synaptonemal complex central element protein 1

Syce1

74,075

6,972,143

3.00

2.06

2.13

Predicted gene 14,403

Gm14403

433,520

6,883,977

2.98

2.79

2.68

RIKEN cDNA 2,610,028 J07 gene

2610028J07Rik

71,813

6,859,453

2.94

2.74

2.82

Microspherule protein 1

Mcrs1

51,812

6,918,337

2.62

2.03

2.30

RIKEN cDNA 2610507I01 gene

2610507I01Rik

72,203

6,788,659

2.60

5.35

3.74

Olfactory receptor 1061

Olfr1061

259,022

6,888,451

2.51

2.81

3.77

Olfactory receptor 170

Olfr170

258,959

6,844,403

2.47

4.67

3.43

Uncharacterized protein C130090J04

C130090J04

328,049

6,860,959

2.36

2.12

2.20

RIKEN cDNA 6,330,403 K07 gene

6330403K07Rik

103,712

6,789,483

2.32

7.15

6.56

Glucagon-like peptide 1 receptor

Glp1r

14,652

6,849,762

−2.02

−2.33

−2.06

Solute carrier family 39 (metal ion transporter), member 8

Slc39a8

67,547

6,901,634

−2.07

−2.43

−2.51

Sodium channel, voltage-gated, type III, alpha

Scn3a

20,269

6,887,324

−2.08

−5.31

−4.49

Sterile alpha motif domain containing 9-like

Samd9l

209,086

6,951,281

−2.08

−2.74

−3.05

Interferon-induced protein 44

Ifi44

99,899

6,910,592

−2.10

−2.86

−2.19

Transmembrane protein 181A

Tmem181a

77,106

6,848,520

−2.13

−2.60

−2.40

NME/NM23 family member 7

Nme7

171,567

6,754,701

−2.13

−2.49

−2.70

Protein phosphatase 1, regulatory (inhibitor) subunit 3A

Ppp1r3a

140,491

6,951,783

−2.19

−2.10

−3.06

Megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)

Mlc1

170,790

6,837,773

−2.24

−2.78

−3.13

Cytochrome P450, family 2, subfamily J, polypeptide 6

Cyp2j6

13,110

6,923,520

−2.29

−2.27

−2.39

RIKEN cDNA A330076H08 gene

A330076H08Rik

320,026

6,967,799

−2.35

−2.53

−2.06

Aminolevulinate, delta-, dehydratase

Alad

17,025

6,922,241

−2.82

−2.54

−2.67

RIKEN cDNA D230046O15 gene

D230046O15Rik

106,824

6,856,766

−3.00

−3.63

−2.54

Nuclear paraspeckle assembly transcript 1 (non-protein coding)

Neat1

66,961

6,867,774

−3.54

−3.45

−2.70

Surfactant associated 2

Sfta2

433,102

6,850,183

−4.02

−2.19

−2.23

Transmembrane protein 181A

Tmem181a

77,106

6,812,918

−4.26

−4.08

−3.40

RIKEN cDNA B930063I24 gene

B930063I24Rik

319,330

6,756,745

−5.06

−4.33

−6.19

G protein-coupled receptor 137B

Gpr137b

83,924

7,003,081

−5.39

−5.38

−3.06

Zinc finger, X-linked, duplicated B

Zxdb

668,166

7,021,109

−6.18

−7.68

−7.23

Kallikrein 1-related peptidase B21

Klk1b21

16,616

6,960,239

−8.25

−19.87

−11.92

Hemolytic complement

Hc

15,139

6,886,022

−8.61

−32.16

−27.88

RIKEN cDNA A730017L22 gene

A730017L22Rik

613,258

6,890,967

−13.13

−15.62

−14.60

  1. Values are mean fold change for transcripts (cut off for fold change ≥2 fold; false discovery rate = 0.10
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Respiratory Research

ISSN: 1465-993X

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