From: Derivation and validation of clinical phenotypes for COPD: a systematic review
Study | Number of variables selected for analysis, method of selecting variables | Statistical method used for identifying phenotypes | Outcome tested |
---|---|---|---|
Burgel et al. (2010) | 8 variables, expert opinion | Cluster using k-means after variable reduction using PCA | BOD§ index |
Burgel et al. (2012) | 8 variables, expert opinion | Cluster using k-means after variable reduction using PCA | Mortality rates after 3.35 years of follow-up |
Burgel et al. (2012) | 18 variables, expert opinion | Hierarchical clustering with Wards method after variables reduction using PCA and MCA | Mortality rates after 17.2 months of follow-up |
Cho et al. (2010) | 43 variables (including 12 SNPs from 5 genes), expert opinion, and selection of genes included in previous genetic association studies | Cluster using k-means after variable reduction using factor analysis | Exacerbations/year over 3.3 years (retrospective) |
DiSantostefano et al. (2013) | 36 variables analyzed, co-linear variables dropped, expert opinion | Tree-based supervised cluster analysis using modified recursive partitioning | Decreased annual rate of exacerbations with SFC compared to SAL |
Garcia-Aymerich et al. (2011) | 224 variables, all variables collected (after excluding those with additive relationships or resulting from categorizations) | Cluster using k-means clustering method (PKM) | Admissions and mortality rates during a 4-year follow-up |
Spinaci et al. (1985) | 4 variables, expert opinion | Cluster using k -means clustering method (PKM) | Analysis of contingency tables |
Vanfleteren et al. (2013) | 13 variables, based on “clinical relevance and methodological possibilities to objectify the comorbidities” | Self- organizing maps (SOMs, or Kohonen maps) used to order patients by their overall similarity with regards to comorbidities. Clusters generated using a hybrid algorithm that applied classical hierarchical method of Ward on top of the SOM topology. | Updated BODE¶ index, Framingham 10-year risk |