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Table 3 Enriched pathways of module 2 from the protein-protein interaction network

From: Genome-wide DNA methylation analysis in lung fibroblasts co-cultured with silica-exposed alveolar macrophages

Gene Set

P-value

FDR

Nodes

ErbB signaling pathway

3.50E-05

3.70E-02

Egfr, Map2k1, Sos1, Sos2, Mapk9, Crk, Shc4

Focal adhension

8.10E-05

8.60E-02

Egfr, Map2k1, Sos1, Sos2, Spp1r12a, Mapk9, Crk, Itgb1, Shc4

MAPK signaling pathway

1.20E-04

1.30E-01

Egfr, Map3k7ip1, Map2k1, Sos1, Sos2, Ppm1a, Mapk9, Cacna1c, Crk, Tgfb1