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Table 1 Optimized conditions for RT-PCR

From: Alveolar macrophages regulate neutrophil recruitment in endotoxin-induced lung injury

   

Size of PCR

 

Gene

Primers

Fragments (bp)

Thermocycle Condition

TNF-α

sense

5'-ACT GAA CTT CGG GGT GAT TG-3'

334

23 cycles; Tm: 57°C

 

antisense

5'-GTG GGT GAG GAG CAG GTA GT-3'

  

IL-1β

sense

5'-AGC TGC ACT GCA GGC TTC GAG ATG-3'

339

28 cycles; Tm: 68°C

 

antisense

5'-GAA CTG TGC AGA CTC AAA CTC CAC-3'

  

MCP-1

sense

5'-TAT GCA GGT CTC TGT CAC GC-3'

255

24 cycles; Tm: 58°C

 

antisense

5'-TTC CTT ATT GGG GTC AGC AC-3'

  

MIP-1β

sense

5'-CGT GTC TGC CTT CTC TCT CC-3'

220

24 cycles; Tm: 58°C

 

antisense

5'-CAC AGA TTT GCC TGC CTT TT-3'

  

ICAM-1

sense

5'-AGG TAT CCA TCC ATC CCA CA-3'

660

22 cycles; Tm: 58°C

 

antisense

5'-CTT CAG AGG CAG GAA ACA GG-3'

  

VCAM-1

sense

5'-CGG TCA TGG TCA AGT GTT TG-3'

570

24 cycles; Tm: 57°C

 

antisense

5'-ACC CTC ATG TAG CCT TGT GG-3'

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