From: Comparative transcriptomics in human COPD reveals dysregulated genes uniquely expressed in ferrets
(A) Up-regulated genes—KEGG | |||||||
---|---|---|---|---|---|---|---|
Gene set | Description | Size | Overlap | Expect | ER | p-value | FDR |
hsa04145 | Phagosome | 152 | 10 | 1.91 | 5.23 | 1.89E−05 | 0.004 |
hsa04142 | Lysosome | 123 | 9 | 1.55 | 5.81 | 2.18E−05 | 0.004 |
hsa04610 | Complement and coagulation cascades | 79 | 5 | 0.99 | 5.03 | 0.003070148 | 0.250 |
hsa05144 | Malaria | 49 | 4 | 0.62 | 6.49 | 0.003233764 | 0.250 |
hsa04611 | Platelet activation | 123 | 6 | 1.55 | 3.88 | 0.004416005 | 0.250 |
hsa04380 | Osteoclast differentiation | 128 | 6 | 1.61 | 3.72 | 0.005361306 | 0.250 |
hsa05323 | Rheumatoid arthritis | 90 | 5 | 1.13 | 4.41 | 0.005373572 | 0.250 |
hsa04210 | Apoptosis | 136 | 6 | 1.71 | 3.51 | 0.007171521 | 0.266 |
hsa04640 | Hematopoietic cell lineage | 97 | 5 | 1.22 | 4.10 | 0.007356998 | 0.266 |
hsa04060 | Cytokine-cytokine receptor interaction | 294 | 9 | 3.70 | 2.43 | 0.011381961 | 0.347 |
(B) Down-regulated genes—KEGG | |||||||
---|---|---|---|---|---|---|---|
Gene set | Description | Size | Overlap | Expect | ER | p-value | FDR |
hsa04060 | Cytokine-cytokine receptor interaction | 294 | 8 | 1.30 | 6.16 | 3.08E−05 | 0.01 |
hsa04080 | Neuroactive ligand-receptor interaction | 277 | 6 | 1.22 | 4.90 | 0.001172172 | 0.19 |
hsa04930 | Type II diabetes mellitus | 46 | 2 | 0.20 | 9.84 | 0.017356504 | 1.00 |
hsa04672 | Intestinal immune network for IgA production | 49 | 2 | 0.22 | 9.24 | 0.01955958 | 1.00 |
hsa03320 | PPAR signaling pathway | 74 | 2 | 0.33 | 6.12 | 0.041960528 | 1.00 |
hsa04020 | Calcium signaling pathway | 183 | 3 | 0.81 | 3.71 | 0.046110736 | 1.00 |
hsa04062 | Chemokine signaling pathway | 189 | 3 | 0.84 | 3.59 | 0.049930188 | 1.00 |
hsa04350 | TGF-beta signaling pathway | 84 | 2 | 0.37 | 5.39 | 0.052704308 | 1.00 |
hsa04974 | Protein digestion and absorption | 90 | 2 | 0.40 | 5.03 | 0.059574237 | 1.00 |
hsa04750 | Inflammatory mediator regulation of TRP channels | 99 | 2 | 0.44 | 4.57 | 0.07042317 | 1.00 |