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Table 2 Top 15 DEGs at 1 h, 4 h, and 24 h after whole cigarette smoke exposure

From: Early transcriptional responses of bronchial epithelial cells to whole cigarette smoke mirror those of in-vivo exposed human bronchial mucosa

Gene symbol

logFC

logCPM

Adj. P-value

FDR

1 h

    

CYP1A1

5.69

8.73

1.23E−17

1.76E−13

ATF3

2.92

6.41

2.91E−16

1.39E−12

HMOX1

4.20

9.42

4.78E−16

1.71E−12

FOSB

3.16

4.71

8.43E−15

2.01E−11

KLF6

1.80

6.62

1.52E−14

3.10E−11

TIPARP

2.34

7.06

1.89E−14

3.38E−11

ZNF331

2.04

4.57

7.22E−14

1.15E−10

PER1

1.51

6.00

1.92E−13

2.74E−10

NR4A2

1.36

6.20

2.73E−13

3.55E−10

CYP1B1

2.70

8.93

3.27E−13

3.90E−10

SNHG3

-1.27

3.93

7.38E−13

8.12E−10

NR4A1

2.43

6.25

8.27E−13

8.45E−10

CBARP

2.64

2.00

1.41E−12

1.34E−09

OVOL1

1.65

3.56

1.70E−12

1.52E−09

RHOB

1.84

6.31

2.92E−12

2.46E−09

4 h

    

TXNRD1

2.76

9.97

1.38E−32

1.97E−28

UNKL

2.70

5.80

2.72E−29

1.94E−25

GCLM

2.66

7.79

1.23E−26

5.87E−23

SQSTM1

2.47

10.51

1.80E−26

6.45E−23

STX3

1.28

6.34

4.49E−26

1.28E−22

ZNF469

3.62

5.31

1.38E−25

3.30E−22

SYNJ2

1.88

6.97

2.31E−25

4.71E−22

GSR

1.26

7.67

9.42E−25

1.68E−21

SLC12A7

1.56

7.84

2.02E−24

3.20E−21

HMOX1

8.16

9.42

5.57E−24

7.96E−21

GCLC

2.33

8.75

6.23E−24

8.10E−21

CYP1A1

9.16

8.73

3.97E−23

4.38E−20

AKR1C3

1.60

7.27

3.98E−23

4.38E−20

CYP4F3

2.75

6.02

1.15E−22

1.13E−19

OSGIN1

4.23

6.66

1.19E−22

1.13E−19

24 h

    

FTL

1.38

9.38

9.49E−16

9.61E−12

G6PD

1.21

7.97

1.34E−15

9.61E−12

TFRC

1.52

7.39

2.38E−15

1.13E−11

CYP1A1

4.21

8.73

4.23E−14

1.21E−10

FTH1

1.30

10.70

9.39E−13

1.92E−09

CYP1B1

2.54

8.93

1.92E−12

3.04E−09

ALDOC

1.25

3.90

6.35E−12

7.57E−09

GPR37L1

1.38

2.82

2.44E−10

1.74E−07

KLF3.AS1

− 1.43

3.76

1.22E−09

7.26E−07

KLK6

1.99

1.88

1.76E−09

9.00E−07

NQO1

1.20

8.47

2.87E−09

1.37E−06

ALDH3A1

1.03

10.37

1.29E−08

4.86E−06

SERPINB4

1.78

5.46

2.60E−08

9.05E−06

PRKN

− 1.39

1.04

2.98E−08

1.01E−05

AKR1B10

1.15

6.46

4.68E−08

1.49E−05

  1. logFC log fold change, logCPM log counts per million, adj. adjusted, FDR false discovery rate