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Table 1 Relative modification profiling of carbonylation, oxidative and e-cigarettes biohazard chemical modifications among control and treated V79 cell proteomes

From: Electronic cigarette liquids impair metabolic cooperation and alter proteomic profiles in V79 cells

Modification type

Control

ECL

ECL-N

NIC

Ratio*

%**

Ratio

%

Ratio

%

Ratio

%

I Carbonylation due to direct oxidation of Lys. Thr and Pro amino acid side chains

2-pyrrolidone from Pro

1

0.03

1.8

0.07

1.4

0.07

1

0.04

2-amino-3-oxo-butanoic_acid from Thr

1

0.15

0.04

0.001

0.02

0.004

0.01

0.002

Lysine oxidation to aminoadipic semialdehyde

N/A

0

0.001

N/A

0

N/A

0

II Carbonylation due to Michael addition reaction of α.β-unsaturated aldehydes derived from lipid peroxidation

Levuglandinyl-lysine anhyropyrrole adduct

1

0.01

2.5

0.05

4

0.11

0.7

0.02

4-hydroxynonenal (HNE)

N/A

0

0.001

0.003

N/A

0

III Carbonylation events due to AGEs formation

Carboxymethyl on N term

N/A

0

0.004

0.002

N/A

0

Other direct oxidative modifications

Met single oxidation (sulfoxide)

1

54

0.8

66

0.7

78

0.8

68

Met double oxidation (sulfone)

1

0.02

5.9

0.2

4.6

0.2

1.9

0.06

His and Trp oxidation

1

0.09

5.9

0.77

4.8

0.85

3.7

0.51

Proline oxidation to pyroglutamic acid

N/A

0

N/A

0

0.003

N/A

0

Tryptophan oxidation to hydroxykynurenin

1

0.01

1.2

0.02

0.9

0.02

1.4

0.02

Chemical modification events most likely caused or enhanced by E-cigarette liquid and nicotine

2.3-dihydro-2 2-dimethyl-7-benzofuranol N-methyl carbamate

N/A

0

N/A

0

0.001

N/A

0

5-dimethylaminonaphthalene-1-sulfonyl

N/A

0

0.004

0.001

0.002

Hydroxymethyl

N/A

0

0.0003

N/A

0

N/A

0

O-Isopropylmethylphosphonylation

N/A

0

0.003

N/A

0

N/A

0

Tri nitro benzene

N/A

0

0.1

0.1

N/A

0

Diethylation

N/A

0

0.002

N/A

0

N/A

0

Acetaldehyde + 26

1

0.01

1.8

0.03

1.5

0.04

1.4

0.03

Dichlorination of tyrosine residues

1

0.0004

45

0.03

32

0.03

27

0.02

Ethylation

1

0.01

2.7

0.05

1.4

0.04

3.4

0.07

Replacement of 2 protons by nickel

1

0.08

1.3

0.16

1.1

0.18

1.1

0.14

  1. *Ratio: sum of areas under extracted ion chromatography (XIC) curves of all modified peptides bearing the same modification type divided by the sum of XIC curve areas of modified peptides from the control group. ** Percentage (%): share of the sum of XIC curve areas of all modified peptides with certain modification type, within summed XIC areas of all proteins per treatment (e.g. share within the complete proteome of the particular treatment). N/A: not applicable since modified peptide form does not exist (e.g. only unmodified form of peptide is present). ∞: when dividing integer with 0 as in the case when expressing ratio where XIC value of control modified peptide is 0