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Table 3 Results obtained from culture isolation and identification via 16S rDNA sequencing for patients with VAP

From: Endotracheal tube microbiome in hospitalized patients defined largely by hospital environment

Sample ID

Isolates

High-throughput sequencing of 16S rDNA*

8-F

No growth

Prevotella melaninogenica, Fusobacterium spp., Enterococcus spp., Neisseria subflava

74-C

E. coli, K. pneumoniae

Enterobacteriaceae spp., Stenotrophomas geniculata, Escherichia coli, Lactobacillus zeae, Halomonas spp.

72-C

C. albicans, M. catarrhalis

Haemophilus influenzae, Enterobacteriaceae spp., Prevotella melaninogenica, Granulicatella spp., Fusobacterium spp., Serratia marcescens

64-C

A. baumanii

Acinetobacter rhizosphaerae, Veillonella dispar, Fusobacterium spp., Prevotella spp.

60-C

E. coli, K. pneumoniae,

Escherichia coli, Enterobacteriaceae spp., Staphylococcus spp., Streptococcus spp., Streptococcus infantis, Neisseria subflava

S. maltophilia

54-C

E. coli

Pseudomonas spp., Escherichia coli, Mycoplasma spp.,Staphylococcus spp., Enterobacteriaceae spp.

52-C

P. aeruginosa,

Serratia marcescens, Pseudomonas spp., Morganella morganii, Providencia spp., Enterococcus spp.

S. marcescens, C. albicans

48-C

No growth

Haemophilus influenzae, Enterobacteriaceae spp., Prevotella melaninogenica, Fusobacterium spp., Staphylococcus spp.

33-C

C. albicans, C. glabrata

10-F

C. albicans, C. tropicalis

Enterobacteriaceae spp., Streptococcus infantis, Sinobacteraceae spp., Rhodoplanes spp., Bacillus cereus

11-C

R. planticolla, Citrobacter koseri

P. aeruginosa, Citrobacter koseri, Proteus spp., E. coli, Trabulsiella farmeri

P. aeruginosa

15-F

C. albicans

Veillonella dispar, Enterobacteriaceae spp., Sinobacteraceae spp., Streptococcus infantis, Thermomonosporacea spp.

19-C

P. aeruginosa,

Stenotrophomonas geniculata, Pseudomonas spp., Enterobacteriaceae, Mycoplasma spp., Parvimonas spp.

K. pneumoniae, Proteus mirabilis

19-F

S. epidermidis

Haemophilus influenzae, Staphylococcus spp., Enterobacteriaceae spp., Pseudomonas spp., Fusobacterium spp.

1-C

K. pneumoniae

Enterobacteriaceae spp., Veillonella dispar, Actinomyces spp., Abiotrophia spp., Streptococcus spp.

20-C

K. pneumoniae

Enterobacteriaceae spp., Escherichia coli, Enterococcus spp., Haemophilus influenzae, Neisseria subflava

24-C

C. albicans

Staphylococcus spp., Mycoplasma spp., Stenotrophomonas geniculata, Haemophilus influenzae, Elizabethkingia meningoseptica

24-F

C. albicans, Candida glabrata

Veillonella dispar, Streptococcus infantis, Streptococcus anginosus, Tannerella spp., Paludibacter spp.

25-C

C. albicans

Mycoplasma spp., Prevotella melaningogenica, Atopobium vaginae, Veillonella dispar, Prevotella spp.

30-C

S. aureus, S. marcescens,

Staphylococcus spp., Serratia marcescens, Escherichia coli, Stenotrophomonas geniculata, Prevotella spp.

E. coli

  1. *Five most abundant OTUs. Samples labeled with letter C belongs to ICU-1, samples labeled with letter F belongs to ICU-2