From: Endotracheal tube microbiome in hospitalized patients defined largely by hospital environment
Sample ID | Isolates | High-throughput sequencing of 16S rDNA* |
---|---|---|
8-F | No growth | Prevotella melaninogenica, Fusobacterium spp., Enterococcus spp., Neisseria subflava |
74-C | E. coli, K. pneumoniae | Enterobacteriaceae spp., Stenotrophomas geniculata, Escherichia coli, Lactobacillus zeae, Halomonas spp. |
72-C | C. albicans, M. catarrhalis | Haemophilus influenzae, Enterobacteriaceae spp., Prevotella melaninogenica, Granulicatella spp., Fusobacterium spp., Serratia marcescens |
64-C | A. baumanii | Acinetobacter rhizosphaerae, Veillonella dispar, Fusobacterium spp., Prevotella spp. |
60-C | E. coli, K. pneumoniae, | Escherichia coli, Enterobacteriaceae spp., Staphylococcus spp., Streptococcus spp., Streptococcus infantis, Neisseria subflava |
S. maltophilia | ||
54-C | E. coli | Pseudomonas spp., Escherichia coli, Mycoplasma spp.,Staphylococcus spp., Enterobacteriaceae spp. |
52-C | P. aeruginosa, | Serratia marcescens, Pseudomonas spp., Morganella morganii, Providencia spp., Enterococcus spp. |
S. marcescens, C. albicans | ||
48-C | No growth | Haemophilus influenzae, Enterobacteriaceae spp., Prevotella melaninogenica, Fusobacterium spp., Staphylococcus spp. |
33-C | C. albicans, C. glabrata | |
10-F | C. albicans, C. tropicalis | Enterobacteriaceae spp., Streptococcus infantis, Sinobacteraceae spp., Rhodoplanes spp., Bacillus cereus |
11-C | R. planticolla, Citrobacter koseri | P. aeruginosa, Citrobacter koseri, Proteus spp., E. coli, Trabulsiella farmeri |
P. aeruginosa | ||
15-F | C. albicans | Veillonella dispar, Enterobacteriaceae spp., Sinobacteraceae spp., Streptococcus infantis, Thermomonosporacea spp. |
19-C | P. aeruginosa, | Stenotrophomonas geniculata, Pseudomonas spp., Enterobacteriaceae, Mycoplasma spp., Parvimonas spp. |
K. pneumoniae, Proteus mirabilis | ||
19-F | S. epidermidis | Haemophilus influenzae, Staphylococcus spp., Enterobacteriaceae spp., Pseudomonas spp., Fusobacterium spp. |
1-C | K. pneumoniae | Enterobacteriaceae spp., Veillonella dispar, Actinomyces spp., Abiotrophia spp., Streptococcus spp. |
20-C | K. pneumoniae | Enterobacteriaceae spp., Escherichia coli, Enterococcus spp., Haemophilus influenzae, Neisseria subflava |
24-C | C. albicans | Staphylococcus spp., Mycoplasma spp., Stenotrophomonas geniculata, Haemophilus influenzae, Elizabethkingia meningoseptica |
24-F | C. albicans, Candida glabrata | Veillonella dispar, Streptococcus infantis, Streptococcus anginosus, Tannerella spp., Paludibacter spp. |
25-C | C. albicans | Mycoplasma spp., Prevotella melaningogenica, Atopobium vaginae, Veillonella dispar, Prevotella spp. |
30-C | S. aureus, S. marcescens, | Staphylococcus spp., Serratia marcescens, Escherichia coli, Stenotrophomonas geniculata, Prevotella spp. |
E. coli |