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Table 2 The top 30 genes differentially expressed by prednisone at 5% FDR in study 1

From: Effect of short-term oral prednisone therapy on blood gene expression: a randomised controlled clinical trial

Gene

GeneName

FC

P-value

FDR

Direction

KLRF1

killer cell lectin-like receptor subfamily F, member 1

1.73

1.16E-06

2.48.E-03

down

GZMH

granzyme H

1.64

1.84E-05

1.42.E-02

down

ADGRG1

adhesion G protein-coupled receptor G1

1.58

8.37E-07

2.14.E-03

down

KLRD1

killer cell lectin-like receptor subfamily D, member 1

1.54

5.04E-06

6.46.E-03

down

GZMA

granzyme A

1.48

2.68E-05

1.90.E-02

down

DHRS9

dehydrogenase/reductase (SDR family) member 9

1.48

1.31E-06

2.52.E-03

down

PDGFD

platelet derived growth factor D

1.46

1.22E-05

1.13.E-02

down

GZMB

granzyme B

1.46

3.08E-07

1.27.E-03

down

NKG7

natural killer cell granule protein 7

1.42

1.88E-06

3.29.E-03

down

S1PR5

sphingosine-1-phosphate receptor 5

1.40

3.30E-07

1.27.E-03

down

C1orf21

chromosome 1 open reading frame 21

1.40

5.70E-05

2.74.E-02

down

GNLY

granulysin

1.38

4.84E-05

2.59.E-02

down

WLS

wntless Wnt ligand secretion mediator

1.36

6.34E-05

2.91.E-02

down

SYTL2

synaptotagmin-like 2

1.36

4.29E-05

2.43.E-02

down

PRF1

perforin 1 (pore forming protein)

1.35

3.83E-05

2.23.E-02

down

SLAMF7

SLAM family member 7

1.33

2.53E-06

4.06.E-03

down

SPON2

spondin 2, extracellular matrix protein

1.33

1.96E-07

1.27.E-03

down

TGFBR3

transforming growth factor beta receptor III

1.28

1.05E-04

4.11.E-02

down

NCR1

natural cytotoxicity triggering receptor 1

1.28

1.00E-04

4.09.E-02

down

PIGB

phosphatidylinositol glycan anchor biosynthesis class B

1.28

8.89E-07

2.14.E-03

down

FAM174A

family with sequence similarity 174, member A

1.27

3.55E-05

2.20.E-02

down

CEP78

centrosomal protein 78 kDa

1.27

6.84E-05

3.06.E-02

down

ID2

inhibitor of DNA binding 2, dominant negative helix-loop-helix protein

1.27

2.27E-07

1.27.E-03

down

ABCB1

ATP binding cassette subfamily B member 1

1.26

1.23E-05

1.13.E-02

down

OSBPL5

oxysterol binding protein-like 5

1.24

1.02E-04

4.09.E-02

down

CYSLTR2

cysteinyl leukotriene receptor 2

1.24

3.08E-06

4.23.E-03

down

SMPDL3A

sphingomyelin phosphodiesterase, acid-like 3A

1.23

5.57E-05

2.74.E-02

down

MILR1

mast cell immunoglobulin-like receptor 1

1.23

1.24E-04

4.78.E-02

up

USP28

ubiquitin specific peptidase 28

1.23

3.83E-05

2.23.E-02

down

CX3CR1

chemokine (C-X3-C motif) receptor 1

1.22

5.92E-05

2.78.E-02

down

  1. The pooled data in prednisone group between day 3 and day 5 was compared with the pooled data in prednisone and control group at day 1. All gene expression data were adjusted for the total number of white blood cells and its differential cell count
  2. FDR false discovery rate, FC fold change