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Table 2 Missense variants in LD with asthma-associated variants

From: Identification of deleterious and regulatory genomic variations in known asthma loci

LD Variants

Asthma Variants

ID

Gene

Annotation

ID(s)

rs115676129

ABI3BP

missensea, b

rs9823506

rs2275254

CHIA

missensea, b

rs2282290

rs2305479

GSDMB

missensea, b

rs2305480, rs62067034, rs11078927, rs7216389, rs907092, rs4795397, rs11655198, rs2290400, rs12450323, rs4794820

rs1129808

HLA-DQA1

missensea, b

rs3104367, rs9272346, rs9273373

rs1142332

HLA-DQA1

missensea, b

rs3104367, rs9272346, rs9273373

rs1049057

HLA-DQB1

missensea, b

rs3104367, rs9272346, rs9273373

rs1140319

HLA-DQB1

missensea, b

rs3104367, rs9272346, rs9273373

rs73022563

PLEKHG4B

missensea, b

rs62344088

rs6482626

PTCHD3

missensea, b

rs660498

rs2305089

TBXT

missensea, b

rs6456042

rs41273547

ABI3BP

missensea

rs9823506

rs148714608

CLSTN2

missensea

rs77960860

rs1042308

HLA-DPA1

missensea

rs987870

rs1071630

HLA-DQA1

missensea

rs3104367, rs9272346, rs9273373

rs1129740

HLA-DQA1

missensea

rs3104367, rs9272346, rs9273373

rs1142328

HLA-DQA1

missensea

rs3104367, rs9272346, rs9273373

rs1142331

HLA-DQA1

missensea

rs3104367, rs9272346, rs9273373

rs3208105

HLA-DQA1

missensea

rs3104367, rs9272346, rs9273373

rs1049163

HLA-DQB1

missensea

rs9273373

rs1130398

HLA-DQB1

missensea

rs3104367, rs9272346, rs9273373

rs1140318

HLA-DQB1

missensea

rs3104367, rs9272346, rs9273373

rs1140320

HLA-DQB1

missensea

rs3104367, rs9272346, rs9273373

rs41558312

MICA

missensea

rs361525

rs1801280

NAT2

missensea

rs1799929, rs1208

rs2363468

PIKFYVE

missensea

rs4673397

rs13436090

PLEKHG4B

missensea

rs62344088

rs3777134

SPINK5

missensea

rs2303064

rs682632

TEK

missensea

rs72721168

rs1140404

HLA-B

missenseb

rs1800629

rs41543121

HLA-B

missenseb

rs1800629

rs41556417

HLA-B

missenseb

rs361525

rs4193

HLA-DQA1

missenseb

rs3104367, rs9272346, rs9273373

rs2233953

PSORS1C2

missenseb

rs1800629

rs7686508

SEC31A

missenseb

rs10022260

  1. Definition of abbreviations: LD Linkage disequilibrium
  2. aPredicted to be deleterious by Sorting Intolerant From Tolerant (SIFT)
  3. bPredicted to be probably damaging by Polyphen-2