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Table 1 Lists of differentially expressed proteins

From: Identification of vitamin D sensitive pathways during lung development

Proteins that were detected in all of the P7 samples

Proteins that were detected in at least three P7 samples

Fold change

Protein names

Gene names

Fold change

Protein names

Gene names

0.97

Lamin-A/C

Lmna

3.68

Acidic leucine-rich nuclear phosphoprotein 32 family member B

Anp32b

0.87

Phosphate carrier protein

Slc25a3

3.51

Basal cell adhesion molecule

Bcam

0.73

Myosin-11

Myh11

3.38

60S ribosomal protein L9

Rpl9

0.65

Sodium/potassium-transporting ATPase subunit alpha-1

Atp1a1

3.29

Trifunctional enzyme subunit beta

Hadhb

0.55

Myosin-14

Myh14

3.21

60S ribosomal protein L5

Rpl5

0.54

Ras-related C3 botulinum toxin substrate 1/3

Rac1/3

3.02

60S ribosomal protein L4

Rpl4

0.38

Myosin-9

Myh9

2.99

rRNA 2-O-methyltransferase fibrillarin

Fbl

0.36

Complement C3

C3

2.70

T-complex protein 1 subunit alpha

Tcp1

−0.38

Poly(rC)-binding protein 2

Pcbp2

2.54

Alpha 1 type Ι collagen

Col1a1

−0.43

Transketolase

Tkt

2.52

Small nuclear ribonucleoprotein Sm D1

Snrpd1

−0.47

Transgelin-2

Tagln2

2.48

26S protease regulatory subunit 4

Psmc1

−0.49

Glutathione S-transferase P 1/2

Gstp1/2

2.46

40S ribosomal protein S16

Rps16

−0.51

Chloride intracellular channel protein 1

Clic1

2.45

60S ribosomal protein L21

Rpl21

−0.53

26S proteasome non-ATPase regulatory subunit 13

Psmd13

2.34

Heterogeneous nuclear ribonucleoprotein H2

Hnrnph2

−0.53

Peroxiredoxin-1

Prdx1

2.23

Sarcoplasmic/endoplasmic reticulum calcium ATPase 2

Atp2a2

−0.55

Prohibitin

Phb

2.23

Interleukin enhancer-binding factor 3

Ilf3

−0.59

3-hydroxyacyl-CoA dehydrogenase type-2

Hsd17b10

2.12

Reticulon-4

Rtn4

−0.59

Protein Niban

Fam129a

2.08

Serum paraoxonase/lactonase 3

Pon3

−0.59

Tropomyosin alpha-4 chain

Tpm4

1.91

E3 ubiquitin-protein ligase NEDD4

Nedd4

−0.64

Protein DJ-1

Park7

1.78

Plasminogen activator inhibitor 1 RNA-binding protein

Serbp1

−0.68

Complement component 1 Q subcomponent-binding protein

C1qbp

1.58

RuvB-like 2

Ruvbl2

−0.74

Transcription factor BTF3

Btf3

1.57

Far upstream element-binding protein 1

Fubp1

−0.90

Peroxiredoxin-6

Prdx6

1.53

Aldehyde dehydrogenase, cytosolic 1

Aldh1a7

−0.95

Eukaryotic translation initiation factor 3 subunit F

Eif3f

1.43

Ribosome-binding protein 1

Rrbp1

−1.01

Proteasome activator complex subunit 1

Psme1

0.97

Lamin-A/C

Lmna

−1.02

Pulmonary surfactant-associated protein B

Sftpb

0.87

Phosphate carrier protein, mitochondrial

Slc25a3

−1.23

Platelet-activating factor acetylhydrolase IB subunit beta

Pafah1b2

0.86

Surfeit locus protein 4

Surf4

−1.30

GTP-binding nuclear protein Ran

Ran

0.54

Myosin-14

Myh14

−1.33

Phosphatidylethanolamine-binding protein 1

Pebp1

0.54

Ras-related C3 botulinum toxin substrate 1/3

Rac1/3

−1.34

6-phosphogluconolactonase

Pgls

0.38

Myosin-9

Myh9

−1.35

Splicing factor 1

Sf1

0.36

Complement C3

C3

−1.37

Macrophage migration inhibitoryv factor

Mif

−0.38

Poly(rC)-binding protein 2

Pcbp2

−1.37

Apolipoprotein A-IV

Apoa4

−0.43

Transketolase

Tkt

−1.42

Actin-related protein 2/3 complex subunit 4

Arpc4

−0.47

Transgelin-2

Tagln2

−1.45

Cystatin-B

Cstb

−0.49

Glutathione S-transferase P 1/2

Gstp1/2

−1.71

Peroxiredoxin-5

Prdx5

−0.51

Chloride intracellular channel protein 1

Clic1

−1.94

S100 calcium-binding protein A11

S100a11

−0.53

26S proteasome non-ATPase regulatory subunit 13

Psmd13

   

−0.53

Peroxiredoxin-1

Prdx1

   

−0.59

Tropomyosin alpha-4 chain

Tpm4

   

−0.64

Protein DJ-1

Park7

   

−0.68

Complement component 1 Q subcomponent-binding protein, mitochondrial

C1qbp

   

−0.95

Eukaryotic translation initiation factor 3 subunit F

Eif3f

   

−1.01

Proteasome activator complex subunit 1

Psme1

   

−1.02

Pulmonary surfactant-associated protein B

Sftpb

   

−1.23

Platelet-activating factor acetylhydrolase IB subunit beta

Pafah1b2

   

−1.31

GTP-binding nuclear protein Ran

Ran

   

−1.33

Phosphatidylethanolamine-binding protein 1; Hippocampal cholinergic neurostimulating peptide

Pebp1

   

−1.34

6-phosphogluconolactonase

Pgls

   

−1.37

Macrophage migration inhibitory factor

Mif

   

−1.37

Apolipoprotein A-IV

Apoa4

   

−1.42

Actin-related protein 2/3 complex subunit 4

Arpc4

   

−1.45

Cystatin-B

Cstb

   

−1.62

Zyxin

Zyx

   

−1.68

2,4-dienoyl-CoA reductase, mitochondrial

Decr1

   

−1.71

Peroxiredoxin-5

Prdx5

   

−1.72

Transforming growth factor beta-1-induced transcript 1 protein

Tgfb1i1

   

−1.94

S100 calcium-binding protein A11

S100a11

   

−2.00

Transcription factor BTF3 homolog 4

Btf3l4

  1. Differentially expressed proteins in lungs of P7 vitamin D deficient vs. replete mice using two analytical approaches; 1) based on the subset of proteins detected in all samples or, 2) based on proteins detected in a minimum of three biological replicates in one or more treatment groups where missing LFQ values were imputed to facilitate the statistical analysis