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Table 4 Estimated haplotype frequencies in patients and controls

From: Comprehensive evaluation of genetic variation in S100A7 suggests an association with the occurrence of allergic rhinitis

SNP

A7:1

A7:2†

rs3006433

A7:3

rs3014839

rs12132927

rs3014837

A7:7

Frequency (%)

 

Haplotype*

        

Controls

Patients

Difference

1

G

I

C

C

C

T

G

C

63.5

60.1

3.4

2

G

I

C

C

C

C

G

C

8.1

9.5

-1.4

3

G

I

C

T

C

T

G

C

7.2

5.7

1.5

4

G

D

T

C

T

T

G

C

6.6

5.5

1.1

5

G

D

T

C

T

T

C

C

3.6

7.1

-3.5

6

G

D

C

C

C

T

G

C

3.4

3.0

0.4

7

T

I

C

T

C

T

G

C

2.5

4.4

-1.9

8

G

I

C

C

C

T

G

A

1.2

0.8

0.4

9

G

I

T

C

T

T

G

C

1.2

1.6

-0.4

10

G

I

T

C

T

T

C

C

1.0

0.6

0.4

  1. * Only haplotypes estimated to be present in at least one individual are listed. This corresponds to 98.3% of all haplotypes present in both patients and controls. A7:5 is not included since it was estimated by PHASE to appear only on haplotypes with lower frequencies. Minor alleles are in bold.
  2. † I = insertion, D = deletion
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Respiratory Research

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