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Table 5 Common lncRNA expression changes in healthy ASM cells after treatment with FCS or Dex + FCS

From: Role of non-coding RNAs in maintaining primary airway smooth muscle cells

    FCS Dex + FCS
Class of lncRNA Ensemble gene ID Transcript Microarray (FC) Microarray (FC)
Known sense overlapping ENST00000314957 CTD-2201E18.3 −1.73 (<.01) 1.78 (<.05)
lincRNA ENST00000414120 LINC00887 −1.81 (<.05) −1.93 (<.01)
Known antisense ENST00000415647 RP11-46A10.4 −1.62 (<.05) −1.65 (<.05)
lincRNA ENST00000417485 AC012668.2 −2.28 (<.01) −1.81 (<.01)
lincRNA ENST00000418539 BCYRN1 −1.53 (<.05) 2.37 (<.05)
Known antisense ENST00000420095 LMCD1-AS1 −1.57 (<.05) 5.65 (<.05)
lincRNA ENST00000426635 LINC00472 1.86 (<.05) 2.64 (<.05)
lincRNA ENST00000431759 SLC2A1-AS1 −1.95 (<.05) −2.09 (<.05)
lincRNA ENST00000433843 SNHG5 −1.74 (<.05) −1.51 (<.01)
lincRNA ENST00000442316 AC074363.1 −1.60 (<.05) −1.62 (<.05)
lincRNA ENST00000444958 DANCR 2.59 (<.05) 2.38 (<.05)
Known antisense ENST00000446423 SDCBP2 −1.82 (<.05) −1.82 (<.05)
lincRNA ENST00000448738 RP1-295F6.2 1.62 (<.05) 1.53 (<.05)
lincRNA ENST00000451910 RP11-344J7.2 2.06 (<.01) 1.66 (<.05)
Known retained intron ENST00000453698 SNHG11 −2.85 (<.01) −2.24 (<.01)
lincRNA ENST00000473636 LINC00882 2.14 (<.05) 2.08 (<.05)
lincRNA ENST00000495228 LINC00883 1.63 (<.05) 1.78 (<.05)
lincRNA ENST00000505448 RP11-774O3.3 −1.57 (<.001) −1.66 (<.05)
Known antisense ENST00000507963 NR2F1-AS1 −1.66 (<.05) −1.61 (<.05)
Known antisense ENST00000509179 MEF2C-AS1 −2.59 (<.05) −2.16 (<.01)
lincRNA ENST00000515296 CTB-35F21.1 −1.83 (<.05) −1.94 (<.05)
lincRNA ENST00000515306 CTB-35F21.2 −2.23 (<.05) −2.15 (<.05)
lincRNA ENST00000515871 CTC-325J23.3 1.60 (<.05) 1.72 (<.01)
lincRNA ENST00000518765 RP11-527N22.1 −1.69 (<.05) −1.53 (<.05)
lincRNA ENST00000518771 RP11-37B2.1 −1.85 (<.001) −1.71 (<.001)
lincRNA ENST00000521128 CTB-43E15.3 −2.07 (<.05) −2.06 (<.05)
lincRNA ENST00000523242 CTB-43E15.1 −1.79 (<.05) −2.02 (<.05)
lincRNA ENST00000523328 PVT1 1.39 (<.01) 1.66 (<.001)
lincRNA ENST00000538996 AP003486.1 −2.69 (<.01) −1.81 (<.05)
  1. This table lists those lncRNAs that have been manually annotated in the Ensembl database and the expression of which is significantly changed in healthy ASM cells after stimulation with FCS (2.5%) or treatment with dexamethasone (10−7 M) before stimulation with FCS (2.5%). Microarray data are denoted as the fold change against baseline control and is the mean of 9 individual patients. These values are for those genes that demonstrated an FDR of less than 0.05; associated P values are shown.