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Table 3 Events (reactions and/or pathways) associated with up-regulated and down-regulated genes

From: Gene expression analysis of a murine model with pulmonary vascular remodeling compared to end-stage IPAH lungs

Event ID*

Event Name†

P value

Input Genes in Event‡

Total No. of Genes§

[Up-regulated Genes]

98458

Immune System

1.5e-04

24

478

86456

Integrin alpha X beta 2 binds JAM-C

7.2e-03

2

6

108524

GPCR ligand binding

3.0e-02

13

322

104591

Eicosanoid ligand-binding receptors

3.8e-02

2

13

23802

Mouse JAK2 binds human common beta chain

5.1e-04

2

2

89750

Hemostasis

1.5e-03

19

400

33150

Endogenous sterols

3.4e-02

2

13

108993

Vitamin B2 metabolism

2.9e-03

2

4

111211

Stat5 tyrosine phosphorylation

4.9e-03

2

5

115537

IL7ra is phosphorylated on Y449

4.9e-03

2

5

81332

Ubiquitination of phospho-p27/p21

1.6e-02

2

9

107910

Synthesis, Secretion, and Deacylation of Ghrelin

2.0e-02

2

10

[Down-regulated Genes]

92778

Axon guidance

3.9e-06

26

353

95727

Myogenesis

4.9e-02

2

13

90528

Signaling by VEGF

4.7e-04

4

14

100071

Integrin cell surface interactions

7.1e-03

9

123

82568

PDGF binds to extracellular matrix proteins

3.6e-02

4

45

118126

I-Smad competes with R-Smad1/5/8 for type I receptor

1.9e-02

2

8

91050

SOS phosphorylation and dissociation

7.3e-03

2

5

112933

Cell-Cell communication

1.7e-02

8

118

95483

Metabolism of nitric oxide

3.0e-02

2

10

84093

Ethanol oxidation

1.1e-03

3

8

79841

FMO oxidizes nucleophiles

2.3e-03

2

3

97703

Apoptotic execution phase

1.1e-02

5

49

107112

Aquaporin-mediated transport

8.0e-03

4

29

84730

MAPK targets/ Nuclear events mediated by MAP kinases

5.0e-02

3

30

  1. *Reactome event accession number.
  2. †Event name according to the Reactome Database.
  3. ‡Number of regulated genes in this model.
  4. §Total number of genes involved in the event.
  5. JAM: Junctional adhesion molecule, GPCR: G protein coupled receptors, JAK: Janus kinase, VEGF: Vascular endothelial growth factor, PDGF: platelet-derived growth factor, SOS: Son of Sevenless proteins, FMO: Flavin Monooxygenases, MAPK: mitogen-activated protein kinase, MAP: Mitogen-activated protein.