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Table 3 List of genes with lung-restricted expression found by tissue correlation analysis with Sftpc.

From: Genome-wide analysis of the mouse lung transcriptome reveals novel molecular gene interaction networks and cell-specific expression signatures

Probe set

Symbol

Description

Location (Chr, Mb)

Mean Expr

BioGPS expression

1418639_at

Sftpc

surfactant associated protein C

Chr14: 70.920826

14,92

high in lung, low in nucleus accumbens

1437028_at

Sftpb

surfactant associated protein B (nonciliated bronchiolar and alveolar type 2 cell signature)

Chr6: 72.260763

13,68

high in lung only

1422334_a_at

Sftpa1

surfactant associated protein A1

Chr14: 41.946994

14,24

high in lung only

1422346_at

Nkx2-1 (Titf1)

thyroid transcription factor 1

Chr12: 57.634187

8,07

lung only

1417057_a_at

Lamp3

lysosomal-associated membrane protein 3

Chr16: 19.653875

12,09

high in lung, low in ES cells and some cell lines

1421404_at

Cxcl15

chemokine (C-X-C motif) ligand 15

Chr5: 91.230349

13,87

high in lung only

1441958_s_at

Ager

advanced glycosylation end product-specific receptor

Chr17: 34.737745

14,69

high in lung only

1436787_x_at

Sec14l3

SEC14-like protein 3

Chr11: 3.978573

13,21

only data for human available - not lung specific

1425218_a_at

Scgb3a2

secretoglobin, family 3A, member 2

Chr18: 43.924081

14,17

high in lung only

1449428_at

Cldn18

claudin 18

Chr9: 99.591247

12,70

highest in lung, lower in stomach

1449525_at

Fmo3

flavin containing monooxygenase 3

Chr1: 164.884088

10,90

high in lung, maybe weak in some other tissues

1425814_a_at

Calcrl

calcitonin receptor-like

Chr2: 84.170818

12,91

high in lung, weak in macrophages

1421373_at

Cox4i2

cytochrome c oxidase subunit IV isoform 2

Chr2: 152.582819

9,24

not specific for lung

1419699_at

Scgb3a1

secretoglobin, family 3A, member 1

Chr11: 49.477871

13,68

high in lung only

1451604_a_at

Acvrl1

activin A receptor, type II-like 1

Chr15: 100.968668

11,86

high in lung only

1420347_at

Plunc

palate, lung, and nasal epithelium carcinoma associated

Chr2: 153.973359

13,42

high in lung, low in heart

  1. Mean Expr: mean expression in lung for BXD strains. BioGPS: evaluation of expression pattern as described in BioGPS.