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Table 1 Table showing the sequences of designed and purchased rat primers and probes of MMPs investigated, the mRNA sequences used for the designs, and the conditions and optimised concentrations of each primer and probe.

From: MMP/TIMP expression profiles in distinct lung disease models: implications for possible future therapies

Assay

PUBMED Assession No

Assay Efficiency

 

Sequence

rat MMP-2

NM_031054

88.57%

Assay on Demand

Applied Biosystems | Rn01538174_m1

    

GATTCTGCCCAGAGACTGCTATGTC

rat MMP-3

NM_133523

95.04%

Forward Primer

5' CCT CTA TGG ACC TCC CAC AGA A 3'

   

Probe

5' TAC CCA CCA AAT CTA ACT CTC TGG ACC CTG AG 3'

   

Reverse Primer

5' CGA AGG ACA AAG CAG AGC TAC AC 3'

rat MMP-7

NM_012864

104.02%

Forward Primer

5' CGG CGG AGA TGC TCA CTT T 3'

   

Probe

5' ACA GGA AGT TCA CTC CTG AGT CCT CAC CAT C 3'

   

Reverse Primer

5' GCC AAG TTC ATG AGT GGC AAC 3'

rat MMP-8

NM_022221

96.15%

Assay on Demand

Applied Biosystems | Rn00573646_m1

    

GAAAACTGCTGAGAATTACCTACGA

rat MMP-9

NM_031055

99.79%

Forward Primer

5' CCG AGA CCT GAA AAC CTC CAA 3'

   

Probe

5' ACA CAC AGC TGG CAG AGG ATT ACC TGT ACC 3'

   

Reverse Primer

GCT GCC CGA GTG TAA CCA TAG 3'

rat MMP-10

NM_133514

94.89%

Forward Primer

5' TCC TGG TGC TGC TGT GCT T 3'

   

Probe

5' CCG ATC TGC TCA GCA TAT CCT CTG CAT 3'

   

Reverse Primer

5' CTA GGT ATT GCT GAG CAA GAT CCA T 3'

rat MMP-11

NM_012980

95.63%

Forward Primer

5' CCT GTG GAT GCA GCT TTT GAG 3'

   

Probe

5' CCA GAT TTG GTT CTT CCA AGG TGC TCA GTA C 3'

   

Reverse Primer

5' GGG CCT AGG ACT GGC TTC TC 3'

rat MMP-12

NM_053963

107.62%

Assay on

Applied Biosystems | Rn00588640_m1

   

Demand

TTCAAGGCACAAACCTGTTCCTTGT

rat MMP-13

XM_217083

98.34%

Forward Primer

5' CCA GTC TCT CTA TGG TCC AGG AGA T 3'

   

Probe

5' AGA CCC CAA CCC TAA GCA CCC CAA AAC 3'

   

Reverse Primer

5' TCG GAG ACT AGT AAT GGC ATC AAG 3'

rat MMP-14

NM_031056

97.42%

Forward Primer

5' CCG CCA TGC AAA GGT TCT A 3'

   

Probe

5' CGA ATC GGC CTT GCC TGT CAC TTG 3'

   

Reverse Primer

5' CGC CTC ATA GCC TTC ATC GT 3'

rat TIMP-1

NM_053819

96.22%

Forward Primer

5' CCA CCT TAT ACC AGC GTT ATG AGA 3'

   

Probe

5' CGT CGA ATC CTT TGA GCA TCT TAG TCA TCT TG 3'

   

Reverse Primer

5' CCG GAA ACC TGT GGC ATT T 3'

rat TIMP-2

NM_021989

98.5%

Forward Primer

5' GCT GGA CGT TGG AGG AAA GA 3'

   

Probe

5' TCT CCT TCC GCC TTC CCT GCA ATT AGA TAT T 3'

   

Reverse Primer

5' GCA CAA TAA AGT CAC AGA GGG TAA TG 3'

rat TIMP-3

NM_012886

100.27%

Forward Primer

5' GAA CGG AAG CGT GCA CAT G 3'

   

Probe

5' CCG ACA TCG TGA TCC GGG CC 3'

   

Reverse Primer

5' CCC TTC CTT CAC CAG CTT CTT 3'

rat TIMP-4

NM_080639

97.27%

Forward Primer

5' TGC AGA GGG AGA GCC TGA A 3'

   

Probe

5' ACT GTG GCT GCC AAA TCA CCA CTT GC 3'

   

Reverse Primer

5' GCC AGT CCG TCC AGA GAC A 3'